RNA id: TU218140


Basic Information

Item Value
RNA id TU218140
length 227
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G192118
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 4352884 ~ 4353110 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCCTTTGTTGTATTTTCTCCTTTTGTGTTCCACAGTACAAAGAAAGTCATACAGGCTTGGAACGACATGATAATCAATAAATGAATTAAACTAAATTAAACTAATCTTCAATGAAAGAATGTATTTCATAGAAATGTAAAGACCAAGCATTAACTGGTAAATGATACCAGTTTACTGATTCCTTATTATCTTTTTGTGGTGGTGCTGTTATTTGGGAGGTCCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217960 lncRNA downstream 383542 3966947 ~ 3969342 (-) True G191941
TU217959 lncRNA downstream 385640 3966947 ~ 3967244 (-) False G191941
TU217954 lncRNA downstream 393925 3958727 ~ 3958959 (-) True G191938
TU217953 lncRNA downstream 394321 3958336 ~ 3958563 (-) True G191937
TU217948 lncRNA downstream 408886 3943779 ~ 3943998 (-) True G191932
TU218148 lncRNA upstream 28422 4381532 ~ 4381735 (-) True G192126
TU218160 lncRNA upstream 46836 4399946 ~ 4400234 (-) True G192138
TU218185 lncRNA upstream 72356 4425466 ~ 4425793 (-) True G192163
TU218276 lncRNA upstream 186584 4539694 ~ 4540445 (-) True G192243
TU218754 lncRNA upstream 264587 4617697 ~ 4618031 (-) True G192671
CI01000043_04297368_04337304.mRNA mRNA downstream 15580 4296824 ~ 4337304 (-) True CI01000043_04297368_04337304
CI01000043_04292518_04294909.mRNA mRNA downstream 57975 4292183 ~ 4294909 (-) True CI01000043_04292518_04294909
CI01000043_04185319_04204509.mRNA mRNA downstream 147843 4185108 ~ 4205041 (-) True CI01000043_04185319_04204509
CI01000043_04168896_04172758.mRNA mRNA downstream 180126 4168871 ~ 4172758 (-) True CI01000043_04168896_04172758
CI01000043_03912564_03929022.mRNA mRNA downstream 423862 3911926 ~ 3929022 (-) True CI01000043_03912564_03929022
CI01000043_04486893_04491014.mRNA mRNA upstream 133491 4486601 ~ 4491988 (-) True CI01000043_04486893_04491014
CI01000043_04701996_04719324.mRNA mRNA upstream 348886 4701996 ~ 4719324 (-) True CI01000043_04701996_04719324
CI01000043_04725324_04728884.mRNA mRNA upstream 371959 4725069 ~ 4728884 (-) True CI01000043_04725324_04728884
CI01000043_04738890_04742485.mRNA mRNA upstream 385780 4738890 ~ 4743454 (-) True CI01000043_04738890_04742485
CI01000043_04821316_04858515.mRNA mRNA upstream 467964 4821074 ~ 4859482 (-) False CI01000043_04821316_04858515
TU218131 other downstream 20158 4331911 ~ 4332726 (-) True G192109
TU217252 other downstream 1303020 3048372 ~ 3049864 (-) True G191296
TU216373 other downstream 2103404 2244688 ~ 2249480 (-) True CI01000043_02245322_02249390
TU215688 other downstream 3469716 825737 ~ 883168 (-) False G189881
TU215686 other downstream 3469716 871379 ~ 883168 (-) True G189881
TU219083 other upstream 1103387 5456497 ~ 5458414 (-) True G192980
TU219049 other upstream 1240571 5593681 ~ 5618440 (-) True G192947
TU219459 other upstream 1902462 6255572 ~ 6256279 (-) True G193313
TU220206 other upstream 2210230 6563340 ~ 6566039 (-) True G193922
TU220402 other upstream 3077776 7478375 ~ 7478742 (-) True CI01000043_07464177_07486461

Expression Profile