RNA id: TU218276


Basic Information

Item Value
RNA id TU218276
length 752
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G192243
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 4539694 ~ 4540445 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAAACAGAACGGGGAATCCGTTCACTGTCGGGAATGTGTGGTGGAATGACTCATGTCGCACCGCGCTGCATCCAGTGTAGACAATATTACTGATTATAATGGGTTCTATTATCATTTGACGCACCGCTCGCGTCCGGTGTACACATGGTGTTATATTCTTTGAAAACAGCGACAACTTCGTTGCAGATAAGACACACCGGCTTTGCATTCACAAAACTAGGTAAGAACGCATAGCTGTCTTTCCATTCTTCTTTGTGTGCCCTATTTTCGCTGTCAACTTTCCTCTTTAGACTCTTTGATAGTGCCATTTTCTCTCACCAGCTAACTTAAATGTTAACATCACTCTGCACACGACGTAATAGCGTACCTCCAGCACGCAAACAATTAAAAAAGAAAAGCAGTTTAGTATGTGAGGATGCCAAGGAATAATTCTGAGTGTAAAAGTAGGCTATGTCAAATAATTATTACAATAAGTTAGGATCCATTGTGTAACAAGCAAATTAAAATGAGACACATTTATTATTCACAATATGGTAGAGGAAATAAAACATAGTTCATTAAGAGCATGACTCAAACATGCCATTAATGGGCTTATTCAAGACCTCTTTTATTTTTTGAGTTATTTTTATCCATTCCGCATCTCCCAAATATGTGTGTTTTAGCAAGGCGGTCTGTGTTGCAAGTTGGTGAATGAAGATACTTGCCAGGTCACTACTTCGCTTTATTAATTTATCCAGTGTAAAACCCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218185 lncRNA downstream 113901 4425466 ~ 4425793 (-) True G192163
TU218160 lncRNA downstream 139460 4399946 ~ 4400234 (-) True G192138
TU218148 lncRNA downstream 157959 4381532 ~ 4381735 (-) True G192126
TU218140 lncRNA downstream 186584 4352884 ~ 4353110 (-) True G192118
TU217960 lncRNA downstream 570352 3966947 ~ 3969342 (-) True G191941
TU218754 lncRNA upstream 77252 4617697 ~ 4618031 (-) True G192671
TU218767 lncRNA upstream 91855 4632300 ~ 4632543 (-) True G192684
TU218771 lncRNA upstream 94777 4635222 ~ 4635468 (-) True G192688
TU218774 lncRNA upstream 99375 4639820 ~ 4640119 (-) True G192691
TU218785 lncRNA upstream 133442 4673887 ~ 4674182 (-) True G192702
CI01000043_04486893_04491014.mRNA mRNA downstream 47706 4486601 ~ 4491988 (-) True CI01000043_04486893_04491014
CI01000043_04297368_04337304.mRNA mRNA downstream 202390 4296824 ~ 4337304 (-) True CI01000043_04297368_04337304
CI01000043_04292518_04294909.mRNA mRNA downstream 244785 4292183 ~ 4294909 (-) True CI01000043_04292518_04294909
CI01000043_04185319_04204509.mRNA mRNA downstream 334653 4185108 ~ 4205041 (-) True CI01000043_04185319_04204509
CI01000043_04168896_04172758.mRNA mRNA downstream 366936 4168871 ~ 4172758 (-) True CI01000043_04168896_04172758
CI01000043_04701996_04719324.mRNA mRNA upstream 161551 4701996 ~ 4719324 (-) True CI01000043_04701996_04719324
CI01000043_04725324_04728884.mRNA mRNA upstream 184624 4725069 ~ 4728884 (-) True CI01000043_04725324_04728884
CI01000043_04738890_04742485.mRNA mRNA upstream 198445 4738890 ~ 4743454 (-) True CI01000043_04738890_04742485
CI01000043_04821316_04858515.mRNA mRNA upstream 280629 4821074 ~ 4859482 (-) False CI01000043_04821316_04858515
CI01000043_04920619_04925317.mRNA mRNA upstream 379949 4920394 ~ 4925317 (-) True CI01000043_04920619_04925317
TU218131 other downstream 206968 4331911 ~ 4332726 (-) True G192109
TU217252 other downstream 1489830 3048372 ~ 3049864 (-) True G191296
TU216373 other downstream 2290214 2244688 ~ 2249480 (-) True CI01000043_02245322_02249390
TU215688 other downstream 3656526 825737 ~ 883168 (-) False G189881
TU219083 other upstream 916052 5456497 ~ 5458414 (-) True G192980
TU219049 other upstream 1053236 5593681 ~ 5618440 (-) True G192947
TU219459 other upstream 1715127 6255572 ~ 6256279 (-) True G193313
TU220206 other upstream 2022895 6563340 ~ 6566039 (-) True G193922
TU220402 other upstream 2890441 7478375 ~ 7478742 (-) True CI01000043_07464177_07486461

Expression Profile