RNA id: TU218774


Basic Information

Item Value
RNA id TU218774
length 300
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G192691
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 4639820 ~ 4640119 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATAGACACGTGATCGATATCAATAAAAAATGTGTTCGATAAAACGTTCGATATTTTTTAATCTTCGTCGGAAGAAAACAGAGGTTGCGAAGCAAGTTTGGTTGCATTAACAAAGGCACTCGCTTTCTGGTAACCTAGCAACGTAGGGAGTGACACGCTAACAGCCAATCATGTAACAGTATCAAGTTTGGTTGCGCCATATCGTTGTCTCGTGCTAGTCTGCTGGATTCCTCTTCAGTAACCGGCGACTGATAAGCAGAAAATGAGTGCCGCAGCGAGCGAGGAAATTGTAATTAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218771 lncRNA downstream 4352 4635222 ~ 4635468 (-) True G192688
TU218767 lncRNA downstream 7277 4632300 ~ 4632543 (-) True G192684
TU218754 lncRNA downstream 21789 4617697 ~ 4618031 (-) True G192671
TU218276 lncRNA downstream 99375 4539694 ~ 4540445 (-) True G192243
TU218185 lncRNA downstream 214027 4425466 ~ 4425793 (-) True G192163
TU218785 lncRNA upstream 33768 4673887 ~ 4674182 (-) True G192702
TU218786 lncRNA upstream 35149 4675268 ~ 4675494 (-) True G192703
TU218787 lncRNA upstream 35414 4675533 ~ 4675842 (-) True G192704
TU218790 lncRNA upstream 46874 4686993 ~ 4687297 (-) True G192707
TU218795 lncRNA upstream 53468 4693587 ~ 4693797 (-) True G192712
CI01000043_04486893_04491014.mRNA mRNA downstream 147832 4486601 ~ 4491988 (-) True CI01000043_04486893_04491014
CI01000043_04297368_04337304.mRNA mRNA downstream 302516 4296824 ~ 4337304 (-) True CI01000043_04297368_04337304
CI01000043_04292518_04294909.mRNA mRNA downstream 344911 4292183 ~ 4294909 (-) True CI01000043_04292518_04294909
CI01000043_04185319_04204509.mRNA mRNA downstream 434779 4185108 ~ 4205041 (-) True CI01000043_04185319_04204509
CI01000043_04168896_04172758.mRNA mRNA downstream 467062 4168871 ~ 4172758 (-) True CI01000043_04168896_04172758
CI01000043_04701996_04719324.mRNA mRNA upstream 61877 4701996 ~ 4719324 (-) True CI01000043_04701996_04719324
CI01000043_04725324_04728884.mRNA mRNA upstream 84950 4725069 ~ 4728884 (-) True CI01000043_04725324_04728884
CI01000043_04738890_04742485.mRNA mRNA upstream 98771 4738890 ~ 4743454 (-) True CI01000043_04738890_04742485
CI01000043_04821316_04858515.mRNA mRNA upstream 180955 4821074 ~ 4859482 (-) False CI01000043_04821316_04858515
CI01000043_04920619_04925317.mRNA mRNA upstream 280275 4920394 ~ 4925317 (-) True CI01000043_04920619_04925317
TU218131 other downstream 307094 4331911 ~ 4332726 (-) True G192109
TU217252 other downstream 1589956 3048372 ~ 3049864 (-) True G191296
TU216373 other downstream 2390340 2244688 ~ 2249480 (-) True CI01000043_02245322_02249390
TU215688 other downstream 3756652 825737 ~ 883168 (-) False G189881
TU219083 other upstream 816378 5456497 ~ 5458414 (-) True G192980
TU219049 other upstream 953562 5593681 ~ 5618440 (-) True G192947
TU219459 other upstream 1615453 6255572 ~ 6256279 (-) True G193313
TU220206 other upstream 1923221 6563340 ~ 6566039 (-) True G193922
TU220402 other upstream 2790767 7478375 ~ 7478742 (-) True CI01000043_07464177_07486461

Expression Profile