RNA id: TU218356


Basic Information

Item Value
RNA id TU218356
length 249
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G192323
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 4688831 ~ 4689079 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTAACAGTAGCATGAATGGATTTGGTAATCAACTAACCTAGTTCTTTATTGTTGCCATTTTATTTGGTTTTATACAACAGTTCGTTCTGGTTCTCAAATCTGATTGGCTAAGAGGTCTTTCCAGCCATGCAATATTCTACCAGTATCGCCACGGGAACCGTTTCACCATGTGAATCACTCCGCTTTCAGCATTCTCATGTTGAGTGTCATGGCGGACGAGCAAACCCACCATGTTTTTTATAGACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218355 lncRNA upstream 1704 4686847 ~ 4687127 (+) True G192322
TU218354 lncRNA upstream 2016 4686606 ~ 4686815 (+) True G192321
TU218343 lncRNA upstream 14603 4673887 ~ 4674228 (+) True G192310
TU218331 lncRNA upstream 77947 4610664 ~ 4610884 (+) True G192298
TU218330 lncRNA upstream 78182 4610352 ~ 4610649 (+) True G192297
TU218360 lncRNA downstream 4987 4694066 ~ 4694384 (+) True G192327
TU218397 lncRNA downstream 75104 4764183 ~ 4764654 (+) True G192356
TU218427 lncRNA downstream 122250 4811329 ~ 4828092 (+) True G192385
TU218459 lncRNA downstream 191120 4880199 ~ 4880508 (+) True G192416
TU218498 lncRNA downstream 305830 4994909 ~ 4995144 (+) True G192455
CI01000043_04471833_04474152.mRNA mRNA upstream 214313 4471629 ~ 4474518 (+) True CI01000043_04471833_04474152
CI01000043_04465956_04468671.mRNA mRNA upstream 218655 4465848 ~ 4470176 (+) True CI01000043_04465956_04468671
CI01000043_04450220_04453014.mRNA mRNA upstream 234966 4449928 ~ 4453865 (+) True CI01000043_04450220_04453014
CI01000043_04440501_04442850.mRNA mRNA upstream 245166 4440357 ~ 4443665 (+) True CI01000043_04440501_04442850
CI01000043_04366197_04369516.mRNA mRNA upstream 318835 4365421 ~ 4369996 (+) True CI01000043_04366197_04369516
CI01000043_04746456_04753978.mRNA mRNA downstream 56943 4746022 ~ 4754364 (+) True CI01000043_04746456_04753978
CI01000043_04813811_04816237.mRNA mRNA downstream 124284 4813363 ~ 4816743 (+) True CI01000043_04813811_04816237
CI01000043_04818939_04819238.mRNA mRNA downstream 129860 4818939 ~ 4820669 (+) True CI01000043_04818939_04819238
CI01000043_04873413_04879547.mRNA mRNA downstream 184334 4873413 ~ 4879602 (+) True CI01000043_04873413_04879547
CI01000043_04887448_04901355.mRNA mRNA downstream 198369 4887448 ~ 4901687 (+) True CI01000043_04887448_04901355
TU217639 other upstream 338217 4307948 ~ 4350614 (+) True G191644
TU217666 other upstream 778865 3903233 ~ 3909966 (+) True G191670
TU216143 other upstream 2245121 2441862 ~ 2443710 (+) True G190272
TU216107 other upstream 2996352 1683556 ~ 1692479 (+) True G190241
TU218497 other downstream 303934 4993013 ~ 4993356 (+) True G192454
TU218527 other downstream 424807 5113886 ~ 5118448 (+) True G192484
TU218579 other downstream 480526 5169605 ~ 5171730 (+) False CI01000043_05169578_05171795
TU218580 other downstream 480526 5169605 ~ 5171730 (+) True CI01000043_05169578_05171795
TU218539 other downstream 778238 5467317 ~ 5552624 (+) True G192489

Expression Profile