RNA id: TU218459


Basic Information

Item Value
RNA id TU218459
length 310
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G192416
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 4880199 ~ 4880508 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCAAGATGTCCATGTCCTTCTTTCTTCAGTCGAAAAGAAATTAAGGTTTTTGATGAAAACATTCCAGGATTTTTCTCCTTATAGTGGACTTCAATGGACTCCAAACGGTTGAAAGTCAAAATGGCAGTTTCAGTGCAGCTTCAAAGGGCTTTAAATGATACCAGACGAGGAAGAAGGGTCTTATCTAGAGGAACAATCTGTCTTTTCTAAAAAAAAAAAAAATTATATACGTTTTAACCATAAACGCTCGTTTTGAGCTAGCTCTCTTCTTCTTCTTCTCTATTAGAATTCCGGCAGTGTAGACACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218427 lncRNA upstream 52107 4811329 ~ 4828092 (+) True G192385
TU218397 lncRNA upstream 115545 4764183 ~ 4764654 (+) True G192356
TU218360 lncRNA upstream 185815 4694066 ~ 4694384 (+) True G192327
TU218356 lncRNA upstream 191120 4688831 ~ 4689079 (+) True G192323
TU218355 lncRNA upstream 193072 4686847 ~ 4687127 (+) True G192322
TU218498 lncRNA downstream 114401 4994909 ~ 4995144 (+) True G192455
TU218504 lncRNA downstream 126918 5007426 ~ 5007733 (+) True G192461
TU218415 lncRNA downstream 166685 5047193 ~ 5050199 (+) True G192373
TU218509 lncRNA downstream 173687 5054195 ~ 5054424 (+) True G192466
TU218512 lncRNA downstream 175851 5056359 ~ 5056568 (+) True G192469
CI01000043_04873413_04879547.mRNA mRNA upstream 597 4873413 ~ 4879602 (+) True CI01000043_04873413_04879547
CI01000043_04818939_04819238.mRNA mRNA upstream 59530 4818939 ~ 4820669 (+) True CI01000043_04818939_04819238
CI01000043_04813811_04816237.mRNA mRNA upstream 63456 4813363 ~ 4816743 (+) True CI01000043_04813811_04816237
CI01000043_04746456_04753978.mRNA mRNA upstream 125835 4746022 ~ 4754364 (+) True CI01000043_04746456_04753978
CI01000043_04471833_04474152.mRNA mRNA upstream 405681 4471629 ~ 4474518 (+) True CI01000043_04471833_04474152
CI01000043_04887448_04901355.mRNA mRNA downstream 6940 4887448 ~ 4901687 (+) True CI01000043_04887448_04901355
CI01000043_04902104_04912376.mRNA mRNA downstream 21596 4902104 ~ 4912376 (+) True CI01000043_04902104_04912376
CI01000043_05025912_05042461.mRNA mRNA downstream 145404 5025912 ~ 5042676 (+) True CI01000043_05025912_05042461
CI01000043_05088157_05094871.mRNA mRNA downstream 207649 5088157 ~ 5095162 (+) True CI01000043_05088157_05094871
CI01000043_05099471_05111989.mRNA mRNA downstream 215217 5095725 ~ 5112379 (+) False CI01000043_05099471_05111989
TU217639 other upstream 529585 4307948 ~ 4350614 (+) True G191644
TU217666 other upstream 970233 3903233 ~ 3909966 (+) True G191670
TU216143 other upstream 2436489 2441862 ~ 2443710 (+) True G190272
TU216107 other upstream 3187720 1683556 ~ 1692479 (+) True G190241
TU218497 other downstream 112505 4993013 ~ 4993356 (+) True G192454
TU218527 other downstream 233378 5113886 ~ 5118448 (+) True G192484
TU218579 other downstream 289097 5169605 ~ 5171730 (+) False CI01000043_05169578_05171795
TU218580 other downstream 289097 5169605 ~ 5171730 (+) True CI01000043_05169578_05171795
TU218539 other downstream 586809 5467317 ~ 5552624 (+) True G192489

Expression Profile