RNA id: TU218498


Basic Information

Item Value
RNA id TU218498
length 236
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G192455
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 4994909 ~ 4995144 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAAGTGGTGGGAGTGTCATGGTCTGGGGCTGCATGAGTGCTGCCGGCACTGGGGAGCTACAGTTCATTAAGGGAACCATGAATGCCAACATGTACTGTGACATACTGAAGCAGAGCATAATCCCCTCCCTTCGGAGACTGGGCCGCAGGGCAGTATTCCAACATGATAACGACCCCAAACACACATCCAAGATGACCACTGCCTTGCTAAAGAAGCTGAGGGTAAAGATGATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218459 lncRNA upstream 114401 4880199 ~ 4880508 (+) True G192416
TU218427 lncRNA upstream 166817 4811329 ~ 4828092 (+) True G192385
TU218397 lncRNA upstream 230255 4764183 ~ 4764654 (+) True G192356
TU218360 lncRNA upstream 300525 4694066 ~ 4694384 (+) True G192327
TU218356 lncRNA upstream 305830 4688831 ~ 4689079 (+) True G192323
TU218504 lncRNA downstream 12282 5007426 ~ 5007733 (+) True G192461
TU218415 lncRNA downstream 52049 5047193 ~ 5050199 (+) True G192373
TU218509 lncRNA downstream 59051 5054195 ~ 5054424 (+) True G192466
TU218512 lncRNA downstream 61215 5056359 ~ 5056568 (+) True G192469
TU218520 lncRNA downstream 74194 5069338 ~ 5069553 (+) True G192477
CI01000043_04902104_04912376.mRNA mRNA upstream 82533 4902104 ~ 4912376 (+) True CI01000043_04902104_04912376
CI01000043_04887448_04901355.mRNA mRNA upstream 93222 4887448 ~ 4901687 (+) True CI01000043_04887448_04901355
CI01000043_04873413_04879547.mRNA mRNA upstream 115307 4873413 ~ 4879602 (+) True CI01000043_04873413_04879547
CI01000043_04818939_04819238.mRNA mRNA upstream 174240 4818939 ~ 4820669 (+) True CI01000043_04818939_04819238
CI01000043_04813811_04816237.mRNA mRNA upstream 178166 4813363 ~ 4816743 (+) True CI01000043_04813811_04816237
CI01000043_05025912_05042461.mRNA mRNA downstream 30768 5025912 ~ 5042676 (+) True CI01000043_05025912_05042461
CI01000043_05088157_05094871.mRNA mRNA downstream 93013 5088157 ~ 5095162 (+) True CI01000043_05088157_05094871
CI01000043_05099471_05111989.mRNA mRNA downstream 100581 5095725 ~ 5112379 (+) False CI01000043_05099471_05111989
CI01000043_05114193_05114497.mRNA mRNA downstream 119049 5114193 ~ 5114497 (+) False CI01000043_05114193_05114497
CI01000043_05119129_05131257.mRNA mRNA downstream 123985 5119129 ~ 5131257 (+) True CI01000043_05119129_05131257
TU218497 other upstream 1553 4993013 ~ 4993356 (+) True G192454
TU217639 other upstream 644295 4307948 ~ 4350614 (+) True G191644
TU217666 other upstream 1084943 3903233 ~ 3909966 (+) True G191670
TU216143 other upstream 2551199 2441862 ~ 2443710 (+) True G190272
TU216107 other upstream 3302430 1683556 ~ 1692479 (+) True G190241
TU218527 other downstream 118742 5113886 ~ 5118448 (+) True G192484
TU218579 other downstream 174461 5169605 ~ 5171730 (+) False CI01000043_05169578_05171795
TU218580 other downstream 174461 5169605 ~ 5171730 (+) True CI01000043_05169578_05171795
TU218539 other downstream 472173 5467317 ~ 5552624 (+) True G192489
TU219250 other downstream 1210544 6205688 ~ 6210893 (+) True G193125

Expression Profile