RNA id: TU218520


Basic Information

Item Value
RNA id TU218520
length 216
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G192477
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 5069338 ~ 5069553 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGATTTTCAGAGGGTTATTATAAAGTGCTTCGCAGTTCTTATAGCCTGTGGATTGATTCATGCTGTGGCACTTTATAGTCCCAAACTCTCCAAGAGGTTCCTGGATAGTGATGCTCTTGTGGGCTGTCACATGCCATTCACTAGTACTGCACTCTACTGCCACAGTGTATACTCCAGCATGACTGTACTTATGGACCACATTCTCCATCCTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218512 lncRNA upstream 12770 5056359 ~ 5056568 (+) True G192469
TU218509 lncRNA upstream 14914 5054195 ~ 5054424 (+) True G192466
TU218415 lncRNA upstream 19139 5047193 ~ 5050199 (+) True G192373
TU218504 lncRNA upstream 61605 5007426 ~ 5007733 (+) True G192461
TU218498 lncRNA upstream 74194 4994909 ~ 4995144 (+) True G192455
TU218521 lncRNA downstream 1325 5070878 ~ 5071097 (+) True G192478
TU218522 lncRNA downstream 6189 5075742 ~ 5078598 (+) True G192479
TU218569 lncRNA downstream 30634 5100187 ~ 5100397 (+) True CI01000043_05099471_05111989
TU218550 lncRNA downstream 90514 5160067 ~ 5160444 (+) True G192495
TU218554 lncRNA downstream 91123 5160676 ~ 5160903 (+) True G192499
CI01000043_05025912_05042461.mRNA mRNA upstream 26662 5025912 ~ 5042676 (+) True CI01000043_05025912_05042461
CI01000043_04902104_04912376.mRNA mRNA upstream 156962 4902104 ~ 4912376 (+) True CI01000043_04902104_04912376
CI01000043_04887448_04901355.mRNA mRNA upstream 167651 4887448 ~ 4901687 (+) True CI01000043_04887448_04901355
CI01000043_04873413_04879547.mRNA mRNA upstream 189736 4873413 ~ 4879602 (+) True CI01000043_04873413_04879547
CI01000043_04818939_04819238.mRNA mRNA upstream 248669 4818939 ~ 4820669 (+) True CI01000043_04818939_04819238
CI01000043_05088157_05094871.mRNA mRNA downstream 18604 5088157 ~ 5095162 (+) True CI01000043_05088157_05094871
CI01000043_05099471_05111989.mRNA mRNA downstream 26172 5095725 ~ 5112379 (+) False CI01000043_05099471_05111989
CI01000043_05114193_05114497.mRNA mRNA downstream 44640 5114193 ~ 5114497 (+) False CI01000043_05114193_05114497
CI01000043_05119129_05131257.mRNA mRNA downstream 49576 5119129 ~ 5131257 (+) True CI01000043_05119129_05131257
CI01000043_05169578_05171795.mRNA mRNA downstream 100025 5169578 ~ 5171848 (+) False CI01000043_05169578_05171795
TU218497 other upstream 75982 4993013 ~ 4993356 (+) True G192454
TU217639 other upstream 718724 4307948 ~ 4350614 (+) True G191644
TU217666 other upstream 1159372 3903233 ~ 3909966 (+) True G191670
TU216143 other upstream 2625628 2441862 ~ 2443710 (+) True G190272
TU216107 other upstream 3376859 1683556 ~ 1692479 (+) True G190241
TU218527 other downstream 44333 5113886 ~ 5118448 (+) True G192484
TU218579 other downstream 100052 5169605 ~ 5171730 (+) False CI01000043_05169578_05171795
TU218580 other downstream 100052 5169605 ~ 5171730 (+) True CI01000043_05169578_05171795
TU218539 other downstream 397764 5467317 ~ 5552624 (+) True G192489
TU219250 other downstream 1136135 6205688 ~ 6210893 (+) True G193125

Expression Profile