RNA id: TU218900


Basic Information

Item Value
RNA id TU218900
length 384
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G192813
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 5160068 ~ 5160451 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAACTATAATGACTAGCTTTCGGCAGACGACCATGTGCATCGATTTGGGTGGAAGAGTGACCTCTGACCCGACAGATGACGTAATGACGAACACAGAAGTGCAGAGGATAGAGCAAAACAAAACACCGGTCATGAATTAGAAGTCTAAAATGAGAATTTTTAAAGATATAACTTCAATATAAGAGAAGAGGAGCTTGAGTTTGTTGCACAGCAATATTTGTTTGAACTGCGAGAGGCGTCTAAGCTTACGATACTCCTACATCTGTGTCATACATCACGTCACAGGTTACTCTTGTGGCGCAAGTCGACTAGTGCAGTATGCGTACGGTCGTCTGCCGGAAGCTAGTTATTTTAGATTATAAAGTTCTAAATATGGATATTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218909 lncRNA downstream 37953 5119052 ~ 5122115 (-) True G192820
TU218904 lncRNA downstream 46536 5109408 ~ 5113532 (-) True G192817
TU218899 lncRNA downstream 47122 5111843 ~ 5112946 (-) True G192812
TU218726 lncRNA downstream 115573 5040141 ~ 5044495 (-) False G192654
TU218728 lncRNA downstream 115573 5041723 ~ 5044495 (-) True G192654
TU218902 lncRNA upstream 724 5161175 ~ 5162326 (-) True G192815
TU218925 lncRNA upstream 3888 5164339 ~ 5197468 (-) True G192836
TU218948 lncRNA upstream 35018 5195469 ~ 5199638 (-) True G192858
TU218941 lncRNA upstream 113270 5273721 ~ 5282134 (-) True G192851
TU218949 lncRNA upstream 127370 5287821 ~ 5294704 (-) True G192859
CI01000043_05075648_05078780.mRNA mRNA downstream 81272 5075648 ~ 5078796 (-) True CI01000043_05075648_05078780
CI01000043_05064629_05069974.mRNA mRNA downstream 90094 5064614 ~ 5069974 (-) True CI01000043_05064629_05069974
CI01000043_05047820_05058629.mRNA mRNA downstream 101439 5047820 ~ 5058629 (-) True CI01000043_05047820_05058629
CI01000043_04998580_05006966.mRNA mRNA downstream 153102 4997896 ~ 5006966 (-) True CI01000043_04998580_05006966
CI01000043_04928149_04970788.mRNA mRNA downstream 189280 4928134 ~ 4970788 (-) True CI01000043_04928149_04970788
CI01000043_05220978_05232290.mRNA mRNA upstream 59862 5220313 ~ 5232290 (-) True CI01000043_05220978_05232290
CI01000043_05447820_05448121.mRNA mRNA upstream 286957 5447408 ~ 5448121 (-) False CI01000043_05447820_05448121
CI01000043_05552260_05560675.mRNA mRNA upstream 391348 5551799 ~ 5560675 (-) True CI01000043_05552260_05560675
CI01000043_05567462_05568782.mRNA mRNA upstream 406920 5567371 ~ 5568980 (-) True CI01000043_05567462_05568782
CI01000043_05620626_05686035.mRNA mRNA upstream 460175 5620626 ~ 5686035 (-) True CI01000043_05620626_05686035
TU218131 other downstream 827342 4331911 ~ 4332726 (-) True G192109
TU217252 other downstream 2110204 3048372 ~ 3049864 (-) True G191296
TU216373 other downstream 2910588 2244688 ~ 2249480 (-) True CI01000043_02245322_02249390
TU215688 other downstream 4276900 825737 ~ 883168 (-) False G189881
TU219083 other upstream 296046 5456497 ~ 5458414 (-) True G192980
TU219049 other upstream 433230 5593681 ~ 5618440 (-) True G192947
TU219459 other upstream 1095121 6255572 ~ 6256279 (-) True G193313
TU220206 other upstream 1402889 6563340 ~ 6566039 (-) True G193922
TU220402 other upstream 2270435 7478375 ~ 7478742 (-) True CI01000043_07464177_07486461

Expression Profile