Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU218546 |
| length | 2934 |
| lncRNA type | antisense_over |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G192493 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000043 |
| NCBI id | null |
| chromosome length | 7746009 |
| location | 5447226 ~ 5450159 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU218586 | lncRNA | upstream | 216063 | 5230935 ~ 5231163 (+) | True | G192529 |
| TU218554 | lncRNA | upstream | 286323 | 5160676 ~ 5160903 (+) | True | G192499 |
| TU218550 | lncRNA | upstream | 286782 | 5160067 ~ 5160444 (+) | True | G192495 |
| TU218569 | lncRNA | upstream | 346829 | 5100187 ~ 5100397 (+) | True | CI01000043_05099471_05111989 |
| TU218522 | lncRNA | upstream | 368628 | 5075742 ~ 5078598 (+) | True | G192479 |
| TU218639 | lncRNA | downstream | 117016 | 5567175 ~ 5567801 (+) | True | G192581 |
| TU218649 | lncRNA | downstream | 143508 | 5593667 ~ 5594645 (+) | False | G192590 |
| TU218651 | lncRNA | downstream | 143508 | 5593667 ~ 5698259 (+) | False | G192590 |
| TU218654 | lncRNA | downstream | 143508 | 5593667 ~ 5626389 (+) | False | G192590 |
| TU218650 | lncRNA | downstream | 231776 | 5681935 ~ 5686028 (+) | True | G192590 |
| CI01000043_05410812_05446376.mRNA | mRNA | upstream | 819 | 5410667 ~ 5446407 (+) | True | CI01000043_05410812_05446376 |
| CI01000043_05388826_05406208.mRNA | mRNA | upstream | 40342 | 5387652 ~ 5406884 (+) | True | CI01000043_05388826_05406208 |
| CI01000043_05368751_05369299.mRNA | mRNA | upstream | 77590 | 5368345 ~ 5369636 (+) | True | CI01000043_05368751_05369299 |
| CI01000043_05334800_05345427.mRNA | mRNA | upstream | 101479 | 5334800 ~ 5345747 (+) | True | CI01000043_05334800_05345427 |
| CI01000043_05261569_05299427.mRNA | mRNA | upstream | 147799 | 5261569 ~ 5299427 (+) | True | CI01000043_05261569_05299427 |
| CI01000043_05456697_05458046.mRNA | mRNA | downstream | 6538 | 5456697 ~ 5459066 (+) | True | CI01000043_05456697_05458046 |
| CI01000043_05538144_05549918.mRNA | mRNA | downstream | 87871 | 5538030 ~ 5550491 (+) | True | CI01000043_05538144_05549918 |
| CI01000043_05733124_05733576.mRNA | mRNA | downstream | 280750 | 5730909 ~ 5734169 (+) | False | CI01000043_05733124_05733576 |
| CI01000043_05805949_05812765.mRNA | mRNA | downstream | 355790 | 5805949 ~ 5813413 (+) | True | CI01000043_05805949_05812765 |
| CI01000043_05878193_05890573.mRNA | mRNA | downstream | 428034 | 5878193 ~ 5891182 (+) | True | CI01000043_05878193_05890573 |
| TU218579 | other | upstream | 275496 | 5169605 ~ 5171730 (+) | False | CI01000043_05169578_05171795 |
| TU218580 | other | upstream | 275496 | 5169605 ~ 5171730 (+) | True | CI01000043_05169578_05171795 |
| TU218527 | other | upstream | 328778 | 5113886 ~ 5118448 (+) | True | G192484 |
| TU218497 | other | upstream | 453870 | 4993013 ~ 4993356 (+) | True | G192454 |
| TU217639 | other | upstream | 1096612 | 4307948 ~ 4350614 (+) | True | G191644 |
| TU218539 | other | downstream | 17158 | 5467317 ~ 5552624 (+) | True | G192489 |
| TU219250 | other | downstream | 755529 | 6205688 ~ 6210893 (+) | True | G193125 |
| TU219499 | other | downstream | 859993 | 6310152 ~ 6310538 (+) | True | G193344 |
| TU219592 | other | downstream | 1193982 | 6644141 ~ 6648342 (+) | True | G193422 |
| TU219777 | other | downstream | 1481817 | 6931976 ~ 6934847 (+) | True | G193584 |
