RNA id: TU219300


Basic Information

Item Value
RNA id TU219300
length 535
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G193168
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 5834191 ~ 5834759 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGCCCCTAATTGGGTGTGAACAAAAACACACCGTTTTTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGCTCCCGGCCCCCTTTCCAGAAGAGGGCGGAGCTTTAACAGCTCGCGCTTTAGTTGCTCAACAACAACAAAGCTGGAGAATCTCATGCAGCCAAAATGAGGATTGTCAGTAACGGTGTTCAGCCTTACATTGTTCAAACCGGAGTCAACACTGACGGAGAGACGTTTCTGAATGGTTAGTGGATAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCGACTAGCATGTGCCGTCATGTTAATCTTTTGTGCAAATCCAGCGTTGAATTGACCCTCGTTTGTGAAGCAGTCCGGCGTAAAATGACGGCATGTCAACAACACTCTACTACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGACCTCACCTCCTTTGTTGCGTGTTCTCGGGGGCGGGGTTTATGTAAATTTTAGGGTTAGTGATGTCACCAACCCGGGAAGAAGCTCGTTGTAGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219170 lncRNA downstream 42701 5791276 ~ 5791490 (-) True G193058
TU219151 lncRNA downstream 69935 5764031 ~ 5764256 (-) True G193039
TU219090 lncRNA downstream 294429 5533344 ~ 5539762 (-) True G192986
TU219104 lncRNA downstream 322060 5510861 ~ 5512131 (-) False G193000
TU219109 lncRNA downstream 322060 5510861 ~ 5512131 (-) True G193000
TU219303 lncRNA upstream 14676 5849435 ~ 5849695 (-) True G193171
TU219304 lncRNA upstream 15720 5850479 ~ 5850734 (-) True G193172
TU219315 lncRNA upstream 40559 5875318 ~ 5875553 (-) True G193183
TU219275 lncRNA upstream 149654 5984413 ~ 5987900 (-) True G193143
TU219345 lncRNA upstream 312032 6146791 ~ 6148592 (-) True G193207
CI01000043_05736025_05736195.mRNA mRNA downstream 97996 5734405 ~ 5736195 (-) True CI01000043_05736025_05736195
CI01000043_05620626_05686035.mRNA mRNA downstream 148156 5620626 ~ 5686035 (-) True CI01000043_05620626_05686035
CI01000043_05567462_05568782.mRNA mRNA downstream 265211 5567371 ~ 5568980 (-) True CI01000043_05567462_05568782
CI01000043_05552260_05560675.mRNA mRNA downstream 273516 5551799 ~ 5560675 (-) True CI01000043_05552260_05560675
CI01000043_05447820_05448121.mRNA mRNA downstream 386070 5447408 ~ 5448121 (-) False CI01000043_05447820_05448121
CI01000043_05898219_05903612.mRNA mRNA upstream 63460 5898219 ~ 5903612 (-) True CI01000043_05898219_05903612
CI01000043_05992881_06008325.mRNA mRNA upstream 158039 5992798 ~ 6008351 (-) True CI01000043_05992881_06008325
CI01000043_06014651_06016474.mRNA mRNA upstream 179651 6014410 ~ 6017018 (-) True CI01000043_06014651_06016474
CI01000043_06044256_06044543.mRNA mRNA upstream 209000 6043759 ~ 6045385 (-) True CI01000043_06044256_06044543
CI01000043_06204424_06208220.mRNA mRNA upstream 369644 6204403 ~ 6208220 (-) True CI01000043_06204424_06208220
TU219049 other downstream 215751 5593681 ~ 5618440 (-) True G192947
TU219083 other downstream 375777 5456497 ~ 5458414 (-) True G192980
TU218131 other downstream 1501465 4331911 ~ 4332726 (-) True G192109
TU217252 other downstream 2784327 3048372 ~ 3049864 (-) True G191296
TU216373 other downstream 3584711 2244688 ~ 2249480 (-) True CI01000043_02245322_02249390
TU219459 other upstream 420813 6255572 ~ 6256279 (-) True G193313
TU220206 other upstream 728581 6563340 ~ 6566039 (-) True G193922
TU220402 other upstream 1596127 7478375 ~ 7478742 (-) True CI01000043_07464177_07486461

Expression Profile