RNA id: TU219275


Basic Information

Item Value
RNA id TU219275
length 2605
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G193143
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 5984413 ~ 5987900 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTGGTGCCGCTCATGGGAACATGTTTCCAGTCATCATCCATGTTGTTAACGGAGGGACTGCGAGAAGAAACCGAGGAAGAAAGGGAACTGAGCGGAGATGATGGGGAAGGTTGTTTAGAAAATGGGGTTTTCCTCAGATGAACACCGGCTTGAACAGTGGGAAAAACAGATGAATGTGTTGTGATTGGCTTTCTTGTTGTCCTTTGGTCAGTGGTTATGGCAGTCTGGTTTTGTGCTTCAAAATCTGCAAACAGAACCAATTCAGGCTTGTTACATAACAGACAAACGTGTCTTAGTGGTTACATTCACCTGAATCAGGCATTTGCCAATTCATCCCACTCACTGCCTTCCGTTTTACCACATCCCTGGCCCTCATAGGAAACCAATCTGTCATGATGTCACATCCAGAATTTCCTATTTCCTTGACACACTAACACTTTGTGTTGATTTGATGCCAAATGGCACAAACTTGGAGTACATAAAAAAAAAAAAAAAAAAAATGTGTATCAGAAAGTTGGACTCAGGTATTAATTTGCAATCAATGGGACTCATTCACTAACCACATATATGCACATATTTCTGCTTAAAATCTGTGTATGAACCTTAATCATTACATTTACATTAAAATTTGTCCTAAATTTGCTCTAAAACTCAGCACCAAATGAAACCACATGCTCACAAAAAATCACATACTCAGCCTTAGAAACTAGAAATTTTAAAAAACCAGTTTTAACTGGTGACTTTGCAAAAGTATGAATTGTTTCTGAGATTATTTCTGAGCAATAATTAATAAGTCATATAAAAATGACACAGATCATGAATGGTCCGAAACACCCATATAAAACTGTTATCTGTGTTTTAATTGGTTTTGAAAATGGCACACTTTGCTTTATTGACCATCTTGATGTGAATGCAAAGCCCTTATAAGGAGATGATTAAGCCGTATTTTAAGCAAATTACTATCACAGGCATGCGGTGCACATTTAGGTACACTATGTAACTTTTATCCCTCTAGTGGTTAAAAAACAAAACTGCATGCGTTTTGCGGAAGAACATTGTTTTGGTTGTGCTTTGGCTCTGAGTGACTGTGAGGATTAATATGGTTATCCTACTGCTCATAATACATTCACTGCTACACTGTAAAAAATAAATCCGCAAAATAACAGAAAAAGTACTGGAAGATCATCACCCAGACATTATCCAGTCATTTTACAGACATTTCTGTTAAGTATGGAAGCTTGTTTCAGCCACTAAATAAGAGTAAAAAAGGTCATTGCAACTTTTATCTTACAATTCTGACTTTTTTTCTCGCAATTGCGAGTTATAAAGTCAGAAATGCACAATATAAATTCAGAATTGCGAGATATAAAGTCAGAATTTTGAGATATAAAGTCAAAAGTTGCGAGTTATAATTTCAGAATTGCGAGATATTGCGAGGTATAAAGTCAGAATTGGGAGGTATAAAGTCAGAATTGGGAGTTATAAAGTCAGAATTGCGAGAAATAAAGTCAGAATTGGGAGTTATAAAGTCAGAATTGCGAGAAATAAAGTCAGAATTGCAAGTTATAAAGTCAGAATTGGGAGTTATAAAGTCAGAATTGCAAGAAATAAAGTCAGAATTGCGAGATATAAAGTCAGAATTGGGAGTTATAAAGTCAGAATTGCGAGATATAAAGTCAGAATTGCGAGAAATAAAGTAAGAATTGCGAGAAATAAAGTCAGAATTGCGAGATATAAAGTCAGAATTGGGAGTTATAAAGTCAGAATTGCGAGATAAAAAGTTGCAATTACCTTTTTTATTTTTTATTTAATGGCAGAAACAAGCTTCCATAGTTAAGCCTAAAACACAATGCAATAAAGTGCAAAATTCTAAATACAGGTGAAACACCTGTAAAAAATGAATACAGAAAATTCTGTTAAATTAATGCAATAATGCAATTAATACATTGTGACCTATTTTTACAGATCTTTTTTAGAGTGTAGGCTTAAGAGATATAAAACAATCCAGTCAGGTCTAAAATATAAACACTTATAATAAGCTTACCATAGTGAATCAAGGTGGGACAAAAACACATTTTGGAGGCAGGAGTGATGACGTATGGACTCATTATTTAAATTTTGATTGCCAATCATGGATCCATAACCATGGCATCTAACAAGTATTTACAGTCAAGTCAAATATTTTACCTGTTGAATTGAAGCAAAACACATCAAATTGTGATATGAGATTCGCACGCCACACGACAACCCCAGTCTTGCCACTGCCACAGTTTGGATTAACCTGAACTCGGGGAACAACAGCGATTTGCTCGTCTATCCACCCGAACCTGAGATTTAAAAAGGAAAATGTTGATTAAATTGATCATTTAATGTGTTAATAATATAATGGTCAGTTCAGCATTGTACATTGTTTTTACTTGCATGTCTCCAGACCGTGTTTGTGGGCCTCTAACACCTGTGCTTTGCTTGCAATAGTCAAACCAAGATGCTCACAGAGATCTCTGGCTGCCGATGCATTTAAGGCGTATTTATCTCCAATGGAGACTTCAGTTACACCGGAGATGGCTTGTTTAGGGTTCACTGTCATTCAGAGGAAGAAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219315 lncRNA downstream 108860 5875318 ~ 5875553 (-) True G193183
TU219304 lncRNA downstream 133679 5850479 ~ 5850734 (-) True G193172
TU219303 lncRNA downstream 134718 5849435 ~ 5849695 (-) True G193171
TU219300 lncRNA downstream 149654 5834191 ~ 5834759 (-) True G193168
TU219170 lncRNA downstream 192923 5791276 ~ 5791490 (-) True G193058
TU219345 lncRNA upstream 158891 6146791 ~ 6148592 (-) True G193207
TU220027 lncRNA upstream 280363 6268263 ~ 6268591 (-) True G193790
TU220036 lncRNA upstream 291067 6278967 ~ 6279240 (-) True G193799
TU220041 lncRNA upstream 299573 6287473 ~ 6287713 (-) True G193804
TU220042 lncRNA upstream 303388 6291288 ~ 6294781 (-) False G193805
CI01000043_05898219_05903612.mRNA mRNA downstream 80801 5898219 ~ 5903612 (-) True CI01000043_05898219_05903612
CI01000043_05736025_05736195.mRNA mRNA downstream 248218 5734405 ~ 5736195 (-) True CI01000043_05736025_05736195
CI01000043_05620626_05686035.mRNA mRNA downstream 298378 5620626 ~ 5686035 (-) True CI01000043_05620626_05686035
CI01000043_05567462_05568782.mRNA mRNA downstream 415433 5567371 ~ 5568980 (-) True CI01000043_05567462_05568782
CI01000043_05552260_05560675.mRNA mRNA downstream 423738 5551799 ~ 5560675 (-) True CI01000043_05552260_05560675
CI01000043_05992881_06008325.mRNA mRNA upstream 4898 5992798 ~ 6008351 (-) True CI01000043_05992881_06008325
CI01000043_06014651_06016474.mRNA mRNA upstream 26510 6014410 ~ 6017018 (-) True CI01000043_06014651_06016474
CI01000043_06044256_06044543.mRNA mRNA upstream 55859 6043759 ~ 6045385 (-) True CI01000043_06044256_06044543
CI01000043_06204424_06208220.mRNA mRNA upstream 216503 6204403 ~ 6208220 (-) True CI01000043_06204424_06208220
CI01000043_06218733_06222025.mRNA mRNA upstream 230833 6218733 ~ 6222768 (-) True CI01000043_06218733_06222025
TU219049 other downstream 365973 5593681 ~ 5618440 (-) True G192947
TU219083 other downstream 525999 5456497 ~ 5458414 (-) True G192980
TU218131 other downstream 1651687 4331911 ~ 4332726 (-) True G192109
TU217252 other downstream 2934549 3048372 ~ 3049864 (-) True G191296
TU216373 other downstream 3734933 2244688 ~ 2249480 (-) True CI01000043_02245322_02249390
TU219459 other upstream 267672 6255572 ~ 6256279 (-) True G193313
TU220206 other upstream 575440 6563340 ~ 6566039 (-) True G193922
TU220402 other upstream 1442986 7478375 ~ 7478742 (-) True CI01000043_07464177_07486461

Expression Profile