RNA id: TU220027


Basic Information

Item Value
RNA id TU220027
length 329
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G193790
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 6268263 ~ 6268591 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACGAAGAAGAGAACTTCCCAATGCTCCCATGCTCGTCAGATGTGACGGAACCCGTCGTGGAGGACCCAAAAAAACTAAACATGCTAGTCTTTCTGTCGGGACGTCGTGAAGTGTTGCAGACACGGCGCTGGTTATCATCCACTATGACACATTTACAAGATAAAACAATCGATTCTTGTGTCCCGGCAGCCATTGTCGTTTACGAATCACCACGACACCCTACGTCAGATGGATCACGTCAAAATTGGGCTGATATTGTGTAGCCTAAACCCGGCATAAAACAAGGAAACAAATTATTACAACATGGCCACGGTTTAGTAAAACGAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219345 lncRNA downstream 119671 6146791 ~ 6148592 (-) True G193207
TU219275 lncRNA downstream 280363 5984413 ~ 5987900 (-) True G193143
TU219315 lncRNA downstream 392710 5875318 ~ 5875553 (-) True G193183
TU219304 lncRNA downstream 417529 5850479 ~ 5850734 (-) True G193172
TU219303 lncRNA downstream 418568 5849435 ~ 5849695 (-) True G193171
TU220036 lncRNA upstream 10376 6278967 ~ 6279240 (-) True G193799
TU220041 lncRNA upstream 18882 6287473 ~ 6287713 (-) True G193804
TU220042 lncRNA upstream 22697 6291288 ~ 6294781 (-) False G193805
TU220044 lncRNA upstream 22697 6291288 ~ 6294781 (-) False G193805
TU220045 lncRNA upstream 22697 6291288 ~ 6294781 (-) True G193805
CI01000043_06225443_06244661.mRNA mRNA downstream 23602 6224972 ~ 6244661 (-) True CI01000043_06225443_06244661
CI01000043_06218733_06222025.mRNA mRNA downstream 45495 6218733 ~ 6222768 (-) True CI01000043_06218733_06222025
CI01000043_06204424_06208220.mRNA mRNA downstream 60043 6204403 ~ 6208220 (-) True CI01000043_06204424_06208220
CI01000043_06044256_06044543.mRNA mRNA downstream 222878 6043759 ~ 6045385 (-) True CI01000043_06044256_06044543
CI01000043_06014651_06016474.mRNA mRNA downstream 251245 6014410 ~ 6017018 (-) True CI01000043_06014651_06016474
CI01000043_06269503_06272443.mRNA mRNA upstream 789 6269380 ~ 6272443 (-) True CI01000043_06269503_06272443
CI01000043_06302312_06306588.mRNA mRNA upstream 33499 6302090 ~ 6306631 (-) True CI01000043_06302312_06306588
CI01000043_06393054_06405683.mRNA mRNA upstream 124133 6392724 ~ 6405683 (-) True CI01000043_06393054_06405683
CI01000043_06408340_06410360.mRNA mRNA upstream 139494 6408085 ~ 6412619 (-) True CI01000043_06408340_06410360
CI01000043_06418312_06429795.mRNA mRNA upstream 149499 6418090 ~ 6430039 (-) True CI01000043_06418312_06429795
TU219459 other downstream 11984 6255572 ~ 6256279 (-) True G193313
TU219049 other downstream 649823 5593681 ~ 5618440 (-) True G192947
TU219083 other downstream 809849 5456497 ~ 5458414 (-) True G192980
TU218131 other downstream 1935537 4331911 ~ 4332726 (-) True G192109
TU217252 other downstream 3218399 3048372 ~ 3049864 (-) True G191296
TU220206 other upstream 294749 6563340 ~ 6566039 (-) True G193922
TU220402 other upstream 1162295 7478375 ~ 7478742 (-) True CI01000043_07464177_07486461

Expression Profile