RNA id: TU220036


Basic Information

Item Value
RNA id TU220036
length 274
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G193799
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 6278967 ~ 6279240 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCGAGTCCTATCCCTATTCTTTTGCACCGTCCGTTGAGGTGAAGACCTCATGTCCCAAGATTCCTCACTCAAACTTGGCGTCATCAAGCTACGCCTTTGTTTTGAATAGGCCTCTAGCGACCTCTAGCGGACAAAATTTTTACATATTGCACCTTTAACTGCTAGAGCGCAGAAAGTTACGGACTGCAGCTTTAAACTGTGGCTGACAGAAGAGTCAACAGCTTTAAAGGGTTAGTTCACACAAAAATTACATTTCTTTCATTAATTACTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220027 lncRNA downstream 10376 6268263 ~ 6268591 (-) True G193790
TU219345 lncRNA downstream 130375 6146791 ~ 6148592 (-) True G193207
TU219275 lncRNA downstream 291067 5984413 ~ 5987900 (-) True G193143
TU219315 lncRNA downstream 403414 5875318 ~ 5875553 (-) True G193183
TU219304 lncRNA downstream 428233 5850479 ~ 5850734 (-) True G193172
TU220041 lncRNA upstream 8233 6287473 ~ 6287713 (-) True G193804
TU220042 lncRNA upstream 12048 6291288 ~ 6294781 (-) False G193805
TU220044 lncRNA upstream 12048 6291288 ~ 6294781 (-) False G193805
TU220045 lncRNA upstream 12048 6291288 ~ 6294781 (-) True G193805
TU220047 lncRNA upstream 17992 6297232 ~ 6299325 (-) True G193806
CI01000043_06269503_06272443.mRNA mRNA downstream 6524 6269380 ~ 6272443 (-) True CI01000043_06269503_06272443
CI01000043_06225443_06244661.mRNA mRNA downstream 34306 6224972 ~ 6244661 (-) True CI01000043_06225443_06244661
CI01000043_06218733_06222025.mRNA mRNA downstream 56199 6218733 ~ 6222768 (-) True CI01000043_06218733_06222025
CI01000043_06204424_06208220.mRNA mRNA downstream 70747 6204403 ~ 6208220 (-) True CI01000043_06204424_06208220
CI01000043_06044256_06044543.mRNA mRNA downstream 233582 6043759 ~ 6045385 (-) True CI01000043_06044256_06044543
CI01000043_06302312_06306588.mRNA mRNA upstream 22850 6302090 ~ 6306631 (-) True CI01000043_06302312_06306588
CI01000043_06393054_06405683.mRNA mRNA upstream 113484 6392724 ~ 6405683 (-) True CI01000043_06393054_06405683
CI01000043_06408340_06410360.mRNA mRNA upstream 128845 6408085 ~ 6412619 (-) True CI01000043_06408340_06410360
CI01000043_06418312_06429795.mRNA mRNA upstream 138850 6418090 ~ 6430039 (-) True CI01000043_06418312_06429795
CI01000043_06454177_06466545.mRNA mRNA upstream 174214 6453454 ~ 6466698 (-) True CI01000043_06454177_06466545
TU219459 other downstream 22688 6255572 ~ 6256279 (-) True G193313
TU219049 other downstream 660527 5593681 ~ 5618440 (-) True G192947
TU219083 other downstream 820553 5456497 ~ 5458414 (-) True G192980
TU218131 other downstream 1946241 4331911 ~ 4332726 (-) True G192109
TU217252 other downstream 3229103 3048372 ~ 3049864 (-) True G191296
TU220206 other upstream 284100 6563340 ~ 6566039 (-) True G193922
TU220402 other upstream 1151646 7478375 ~ 7478742 (-) True CI01000043_07464177_07486461

Expression Profile