RNA id: TU220108


Basic Information

Item Value
RNA id TU220108
length 255
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G193858
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 6349044 ~ 6349298 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGCATTTTAGCGCTAAAACTAGCTCCTAAATCTGTGAAACGCTAGGAGTAGTCAAGAGGACTCGTAAGTCACTAAGACCAAATCAAAAACAGTCCTAAAATGATTGTTGGTGCCAATCCGCTTTAGCAATCCACCCAAAGACACTGTACACCATTGAAGCAATAGCGATAGAGCCTTGGGGGCAGTAGTGCAATACGGAGCAGGAAGAGCAAAAACAGCAGAAACTTAACGAACATGAAAAACAGCTTGTTCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220107 lncRNA downstream 125 6348634 ~ 6348919 (-) True G193857
TU220105 lncRNA downstream 1140 6347648 ~ 6347904 (-) True G193855
TU220104 lncRNA downstream 1469 6347305 ~ 6347575 (-) True G193854
TU220099 lncRNA downstream 5608 6343160 ~ 6343436 (-) True G193849
TU220092 lncRNA downstream 21742 6325783 ~ 6327302 (-) True G193843
TU220109 lncRNA upstream 196 6349494 ~ 6349693 (-) True G193859
TU220111 lncRNA upstream 1016 6350314 ~ 6351742 (-) True G193861
TU220112 lncRNA upstream 2478 6351776 ~ 6352021 (-) True G193862
TU220113 lncRNA upstream 2819 6352117 ~ 6352356 (-) True G193863
TU220173 lncRNA upstream 144095 6493393 ~ 6493635 (-) True G193895
CI01000043_06302312_06306588.mRNA mRNA downstream 42413 6302090 ~ 6306631 (-) True CI01000043_06302312_06306588
CI01000043_06269503_06272443.mRNA mRNA downstream 76601 6269380 ~ 6272443 (-) True CI01000043_06269503_06272443
CI01000043_06225443_06244661.mRNA mRNA downstream 104383 6224972 ~ 6244661 (-) True CI01000043_06225443_06244661
CI01000043_06218733_06222025.mRNA mRNA downstream 126276 6218733 ~ 6222768 (-) True CI01000043_06218733_06222025
CI01000043_06204424_06208220.mRNA mRNA downstream 140824 6204403 ~ 6208220 (-) True CI01000043_06204424_06208220
CI01000043_06393054_06405683.mRNA mRNA upstream 43426 6392724 ~ 6405683 (-) True CI01000043_06393054_06405683
CI01000043_06408340_06410360.mRNA mRNA upstream 58787 6408085 ~ 6412619 (-) True CI01000043_06408340_06410360
CI01000043_06418312_06429795.mRNA mRNA upstream 68792 6418090 ~ 6430039 (-) True CI01000043_06418312_06429795
CI01000043_06454177_06466545.mRNA mRNA upstream 104156 6453454 ~ 6466698 (-) True CI01000043_06454177_06466545
CI01000043_06496689_06498999.mRNA mRNA upstream 147312 6496610 ~ 6499071 (-) True CI01000043_06496689_06498999
TU219459 other downstream 92765 6255572 ~ 6256279 (-) True G193313
TU219049 other downstream 730604 5593681 ~ 5618440 (-) True G192947
TU219083 other downstream 890630 5456497 ~ 5458414 (-) True G192980
TU218131 other downstream 2016318 4331911 ~ 4332726 (-) True G192109
TU217252 other downstream 3299180 3048372 ~ 3049864 (-) True G191296
TU220206 other upstream 214042 6563340 ~ 6566039 (-) True G193922
TU220402 other upstream 1081588 7478375 ~ 7478742 (-) True CI01000043_07464177_07486461

Expression Profile