RNA id: TU220111



Basic Information


Item Value
RNA id TU220111
length 1429
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G193861
representative True

Chromosome Information


Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 6350314 ~ 6351742 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCCATTGTTTATGCCAAAACACTGAAAAATGCATTTTACTAAAAAGGACATTATAACAACATGCATTAATAGTTATTATATACAAAGAAATGTGTAACGGCACAGTAAAAAAAGTAACTTTTGTTAGTCCAGCTATTTACTTTCTTTTTAAAATGATTTAAATCCTTTTTACTTCATCTTTGGCTGTTCATCATCTTAGCTGTGCTGACATTTAATGAACCCAGGTTCTGTGTTTTCGGTGTTCCATTGAATCATGTGATCATTACACAAATTCAGCTTTTTGTTGTTAGCAATACGGACCAGGTGTCTGTAAATTCCTCCAGAACTCAACTTGGTTTGTCAAGCTTCGTGTCGTTGTGGCGATGAGTTTTGAATAGCGACAGCGGTTATAATCAACAGGGAAGACATTGAATAGGCTTCCATCAGGTGGATCAGTCAAATCAATTCCTAAATGTTTCATGCATAGGCCTAAAAAAACATCCTCTATGTAAACCGGTTTGACATGTTGGGCTGCTTCAACAAGCTTCACTGTCAGGTCAAGAGAGAACACATATCCCAAGCCAAGAGCGTAGGGTGGATATTGAGCTGGAGCATAAACTGTTTGTGGTAGGTACCATTTAGAATGGGGGTTTCTCAATACCATTGCTCTCCTGGCCACAAGTCCAGACATATAGTTCTGCTTTGGTGATGACAGAAGCAAATTCACCAAGTTTTTCACGTTGAGAAATATATCCGAATCGACCTTCATTGCGTAGGATGCATTCTGACAATTAGCAGACAGCCATTCTAGCATTACTATTGTTTTAATGGTGAGATTGTAGTAACTGTCCCAGAAATCACTTTGTAAAAGGTCATGATACTTCTCGCTTTCCTGCAACAAATCTTCTTGAAGCTTTTCGCTGTCTTGTGACGTGGGCAGACCTAACAGAAATAATAAGCTCACTATCTTGTCCCCTACTAACCTCTCTGAACCCCACGTTGAACGGATGGCCTCCCGAGCAGCCGTATTACTTGGAGCTACTGGTATAATCAACATTACAAAAACATTTTCCTTCTGGCACTTCTGTGGCTCATTGATGATGAAATTATACCTGTTTGGGTAAGCCACATAATATGGTTCTGGAGGCTTCCACGGTTTAGCAGAAGTCCCTGCTGATACTGTAGTCAGCGAAATGTTGGTTGTCTTATTAATGAGAGTCTCTGGAGGAAATTTTCCAACTTTTGGCATCCAGCTTTCTGAGTTTTCATAGGTGGGAATGCAGTAACACAGGAACAGGATCAGCAAAATGATGAATATGACAAACGAACGAAGAGTTCTGCTTCCGCCATTTGATTGCACTTGACTAAAAAGAGAAAACAAGTCTTTTGGCACGTCTATGTAATGATGCATTCAGATAAATAAACGTTTATTATCAATAATACACACAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU220109 lncRNA downstream 621 6349494 ~ 6349693 (-) True G193859
TU220108 lncRNA downstream 1016 6349044 ~ 6349298 (-) True G193858
TU220107 lncRNA downstream 1395 6348634 ~ 6348919 (-) True G193857
TU220105 lncRNA downstream 2410 6347648 ~ 6347904 (-) True G193855
TU220104 lncRNA downstream 2739 6347305 ~ 6347575 (-) True G193854
TU220112 lncRNA upstream 34 6351776 ~ 6352021 (-) True G193862
TU220113 lncRNA upstream 375 6352117 ~ 6352356 (-) True G193863
TU220173 lncRNA upstream 141651 6493393 ~ 6493635 (-) True G193895
TU220187 lncRNA upstream 188271 6540013 ~ 6542839 (-) True G193907
TU220401 lncRNA upstream 1076724 7496788 ~ 7498973 (-) True G194100
CI01000043_06302312_06306588.mRNA mRNA downstream 43683 6302090 ~ 6306631 (-) True CI01000043_06302312_06306588
CI01000043_06269503_06272443.mRNA mRNA downstream 77871 6269380 ~ 6272443 (-) True CI01000043_06269503_06272443
CI01000043_06225443_06244661.mRNA mRNA downstream 105653 6224972 ~ 6244661 (-) True CI01000043_06225443_06244661
CI01000043_06218733_06222025.mRNA mRNA downstream 127546 6218733 ~ 6222768 (-) True CI01000043_06218733_06222025
CI01000043_06204424_06208220.mRNA mRNA downstream 142094 6204403 ~ 6208220 (-) True CI01000043_06204424_06208220
CI01000043_06393054_06405683.mRNA mRNA upstream 40982 6392724 ~ 6405683 (-) True CI01000043_06393054_06405683
CI01000043_06408340_06410360.mRNA mRNA upstream 56343 6408085 ~ 6412619 (-) True CI01000043_06408340_06410360
CI01000043_06418312_06429795.mRNA mRNA upstream 66348 6418090 ~ 6430039 (-) True CI01000043_06418312_06429795
CI01000043_06454177_06466545.mRNA mRNA upstream 101712 6453454 ~ 6466698 (-) True CI01000043_06454177_06466545
CI01000043_06496689_06498999.mRNA mRNA upstream 144868 6496610 ~ 6499071 (-) True CI01000043_06496689_06498999
TU219459 other downstream 94035 6255572 ~ 6256279 (-) True G193313
TU219049 other downstream 731874 5593681 ~ 5618440 (-) True G192947
TU219083 other downstream 891900 5456497 ~ 5458414 (-) True G192980
TU218131 other downstream 2017588 4331911 ~ 4332726 (-) True G192109
TU217252 other downstream 3300450 3048372 ~ 3049864 (-) True G191296
TU220206 other upstream 211598 6563340 ~ 6566039 (-) True G193922
TU220402 other upstream 1079144 7478375 ~ 7478742 (-) True CI01000043_07464177_07486461

Expression Profile