RNA id: TU220112


Basic Information

Item Value
RNA id TU220112
length 246
lncRNA type antisense_over
GC content 0.31
exon number 1
gene id G193862
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 6351776 ~ 6352021 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTAAACTGAACATAATGGTGACAGAGGGTGAGTAATTAATGACATAATTTTCACTTTTGGGTAAACTATCCCTTTAACACATGGTTTAAAGACTGCAGCCATTGAAAGCTTTATAAATTCCATCACTTTCTTTTCAAAACCATAGCAATACATTTTGTTTAACAAATATCTTAACCTATCTATGGCCTCTTCTGTGCATACAGTATATTTTGATTGTTTATTTTTTATTTTTTTGAAGAGCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220111 lncRNA downstream 34 6350314 ~ 6351742 (-) True G193861
TU220109 lncRNA downstream 2083 6349494 ~ 6349693 (-) True G193859
TU220108 lncRNA downstream 2478 6349044 ~ 6349298 (-) True G193858
TU220107 lncRNA downstream 2857 6348634 ~ 6348919 (-) True G193857
TU220105 lncRNA downstream 3872 6347648 ~ 6347904 (-) True G193855
TU220113 lncRNA upstream 96 6352117 ~ 6352356 (-) True G193863
TU220173 lncRNA upstream 141372 6493393 ~ 6493635 (-) True G193895
TU220187 lncRNA upstream 187992 6540013 ~ 6542839 (-) True G193907
TU220401 lncRNA upstream 1076445 7496788 ~ 7498973 (-) True G194100
TU220419 lncRNA upstream 1139924 7491945 ~ 7724924 (-) True G194116
CI01000043_06302312_06306588.mRNA mRNA downstream 45145 6302090 ~ 6306631 (-) True CI01000043_06302312_06306588
CI01000043_06269503_06272443.mRNA mRNA downstream 79333 6269380 ~ 6272443 (-) True CI01000043_06269503_06272443
CI01000043_06225443_06244661.mRNA mRNA downstream 107115 6224972 ~ 6244661 (-) True CI01000043_06225443_06244661
CI01000043_06218733_06222025.mRNA mRNA downstream 129008 6218733 ~ 6222768 (-) True CI01000043_06218733_06222025
CI01000043_06204424_06208220.mRNA mRNA downstream 143556 6204403 ~ 6208220 (-) True CI01000043_06204424_06208220
CI01000043_06393054_06405683.mRNA mRNA upstream 40703 6392724 ~ 6405683 (-) True CI01000043_06393054_06405683
CI01000043_06408340_06410360.mRNA mRNA upstream 56064 6408085 ~ 6412619 (-) True CI01000043_06408340_06410360
CI01000043_06418312_06429795.mRNA mRNA upstream 66069 6418090 ~ 6430039 (-) True CI01000043_06418312_06429795
CI01000043_06454177_06466545.mRNA mRNA upstream 101433 6453454 ~ 6466698 (-) True CI01000043_06454177_06466545
CI01000043_06496689_06498999.mRNA mRNA upstream 144589 6496610 ~ 6499071 (-) True CI01000043_06496689_06498999
TU219459 other downstream 95497 6255572 ~ 6256279 (-) True G193313
TU219049 other downstream 733336 5593681 ~ 5618440 (-) True G192947
TU219083 other downstream 893362 5456497 ~ 5458414 (-) True G192980
TU218131 other downstream 2019050 4331911 ~ 4332726 (-) True G192109
TU217252 other downstream 3301912 3048372 ~ 3049864 (-) True G191296
TU220206 other upstream 211319 6563340 ~ 6566039 (-) True G193922
TU220402 other upstream 1078865 7478375 ~ 7478742 (-) True CI01000043_07464177_07486461

Expression Profile