RNA id: TU220173


Basic Information

Item Value
RNA id TU220173
length 221
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G193895
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 6493393 ~ 6493635 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCATGATACGACAATTCTTGAAAAATTTTACGTAATCAGATTACTTTTTTCAAGTAACTAGTAAAGAAACACATTACTTTTAAATTTACAACAAAATATCTGAGTTACTTTTTCGAATACGTAACGCAAGTTATTTTGTTTTCCCATCATATTGACTGACAGCTCCTCTGTTCCCATGTTGAGAGAAATCTGGAGTGAGTGCAGAGGCGTTGTGTGCACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220113 lncRNA downstream 141037 6352117 ~ 6352356 (-) True G193863
TU220112 lncRNA downstream 141372 6351776 ~ 6352021 (-) True G193862
TU220111 lncRNA downstream 141651 6350314 ~ 6351742 (-) True G193861
TU220109 lncRNA downstream 143700 6349494 ~ 6349693 (-) True G193859
TU220108 lncRNA downstream 144095 6349044 ~ 6349298 (-) True G193858
TU220187 lncRNA upstream 46378 6540013 ~ 6542839 (-) True G193907
TU220401 lncRNA upstream 934831 7496788 ~ 7498973 (-) True G194100
TU220419 lncRNA upstream 998310 7491945 ~ 7724924 (-) True G194116
TU220403 lncRNA upstream 1001362 7494997 ~ 7498633 (-) False G194100
TU220423 lncRNA upstream 1020228 7513863 ~ 7560313 (-) True G194120
CI01000043_06454177_06466545.mRNA mRNA downstream 26695 6453454 ~ 6466698 (-) True CI01000043_06454177_06466545
CI01000043_06418312_06429795.mRNA mRNA downstream 63354 6418090 ~ 6430039 (-) True CI01000043_06418312_06429795
CI01000043_06408340_06410360.mRNA mRNA downstream 80774 6408085 ~ 6412619 (-) True CI01000043_06408340_06410360
CI01000043_06393054_06405683.mRNA mRNA downstream 87710 6392724 ~ 6405683 (-) True CI01000043_06393054_06405683
CI01000043_06302312_06306588.mRNA mRNA downstream 186762 6302090 ~ 6306631 (-) True CI01000043_06302312_06306588
CI01000043_06496689_06498999.mRNA mRNA upstream 2975 6496610 ~ 6499071 (-) True CI01000043_06496689_06498999
CI01000043_06587352_06594218.mRNA mRNA upstream 93674 6587309 ~ 6594358 (-) True CI01000043_06587352_06594218
CI01000043_06600284_06605957.mRNA mRNA upstream 106649 6600284 ~ 6605957 (-) True CI01000043_06600284_06605957
CI01000043_06608949_06716808.mRNA mRNA upstream 115314 6608949 ~ 6716808 (-) True CI01000043_06608949_06716808
CI01000043_06764034_06770845.mRNA mRNA upstream 269278 6762913 ~ 6770845 (-) True CI01000043_06764034_06770845
TU219459 other downstream 237114 6255572 ~ 6256279 (-) True G193313
TU219049 other downstream 874953 5593681 ~ 5618440 (-) True G192947
TU219083 other downstream 1034979 5456497 ~ 5458414 (-) True G192980
TU218131 other downstream 2160667 4331911 ~ 4332726 (-) True G192109
TU217252 other downstream 3443529 3048372 ~ 3049864 (-) True G191296
TU220206 other upstream 69705 6563340 ~ 6566039 (-) True G193922
TU220402 other upstream 937251 7478375 ~ 7478742 (-) True CI01000043_07464177_07486461

Expression Profile