RNA id: TU219654


Basic Information

Item Value
RNA id TU219654
length 375
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G193476
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 6676202 ~ 6695485 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCACTTCAAAAAACATGCAAAACGAACATGATGGTAATCCAAGTGACCAAAGTTGATGTATCAAAGTCTTCTGAAGCAAAACAATAGGTTTGTGTGAGAAAAATACTATTTCTTAAAACTTTTTTTAAATTATAATAAACCATCGCTTCCAGCCATCTGTAAAACGCGGGTTTATGAGTTCACGCTTGACATAAATACCAGCACATCGTGAAGTAGAGCTGCGTGATCAATCATTAAAAGATCGTGATCTCGATTCAAACACACGCGATCTTATTCCTAAATTACAGCAATTCATGTATGTCTATCAAACCTAGAGAGAGTAGTTGTCATGTATAGTTATGAAACAGCTTCACAAACAGTCTTTTCAACCACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219631 lncRNA upstream 8765 6661308 ~ 6667437 (+) True G193453
TU219615 lncRNA upstream 64937 6610218 ~ 6611265 (+) True G193437
TU219558 lncRNA upstream 223019 6452972 ~ 6453183 (+) True G193393
TU219477 lncRNA upstream 228862 6439243 ~ 6447340 (+) True G193331
TU219541 lncRNA upstream 260203 6415794 ~ 6415999 (+) True G193383
TU219644 lncRNA downstream 74950 6770435 ~ 6770811 (+) True G193466
TU219753 lncRNA downstream 191815 6887300 ~ 6888783 (+) True G193574
TU219786 lncRNA downstream 267292 6962777 ~ 6963098 (+) True G193593
TU219787 lncRNA downstream 282446 6977931 ~ 6978182 (+) True G193594
TU219788 lncRNA downstream 282924 6978409 ~ 6978648 (+) True G193595
CI01000043_06521172_06566044.mRNA mRNA upstream 110158 6521172 ~ 6566044 (+) True CI01000043_06521172_06566044
CI01000043_06504682_06515792.mRNA mRNA upstream 160408 6504682 ~ 6515794 (+) True CI01000043_06504682_06515792
CI01000043_06480540_06490898.mRNA mRNA upstream 185237 6478556 ~ 6490965 (+) True CI01000043_06480540_06490898
CI01000043_06440287_06445256.mRNA mRNA upstream 230797 6440287 ~ 6445405 (+) True CI01000043_06440287_06445256
CI01000043_06379017_06386958.mRNA mRNA upstream 287840 6379017 ~ 6388362 (+) True CI01000043_06379017_06386958
CI01000043_06751472_06754745.mRNA mRNA downstream 55987 6751472 ~ 6755940 (+) True CI01000043_06751472_06754745
CI01000043_06794188_06795136.mRNA mRNA downstream 98606 6794091 ~ 6795192 (+) True CI01000043_06794188_06795136
CI01000043_06825336_06826471.mRNA mRNA downstream 128925 6824410 ~ 6827608 (+) True CI01000043_06825336_06826471
CI01000043_06844060_06880471.mRNA mRNA downstream 148286 6843771 ~ 6880498 (+) True CI01000043_06844060_06880471
CI01000043_06911881_06926878.mRNA mRNA downstream 216048 6911533 ~ 6927300 (+) True CI01000043_06911881_06926878
TU219592 other upstream 27860 6644141 ~ 6648342 (+) True G193422
TU219499 other upstream 365664 6310152 ~ 6310538 (+) True G193344
TU219250 other upstream 465309 6205688 ~ 6210893 (+) True G193125
TU218539 other upstream 1123578 5467317 ~ 5552624 (+) True G192489
TU218580 other upstream 1504472 5169605 ~ 5171730 (+) True CI01000043_05169578_05171795
TU219777 other downstream 236491 6931976 ~ 6934847 (+) True G193584
TU219856 other downstream 796452 7491937 ~ 7492103 (+) True G193636
TU219850 other downstream 818454 7560159 ~ 7560328 (+) False CI01000043_07551619_07563172
TU219852 other downstream 818454 7652715 ~ 7652885 (+) True CI01000043_07650041_07652969
TU219858 other downstream 818454 7597853 ~ 7597959 (+) True G193636

Expression Profile