RNA id: TU219762


Basic Information

Item Value
RNA id TU219762
length 346
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G193582
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 6981657 ~ 6982123 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTTTATTACCACTGTCTTAATTTAAAACACACATTTTTTAAGATTTCATTCTATTCCCTGCTACATAAACACCAAAAAATCAAACATATTAAAAACAATACAGTACTTGGCATTATGACTTCACATTCACTTTTCATTTCAAAGATCTGATCTGGATACAGTTTTCCAGTCTGTGGTAATGACTCCCATCTCCCTGAAGACTGATCTTGGATCAGACACGGTTCAGTCAGATTGAGCAGGGAAAAACTGGCGTAGAAGGTCCTTCTTATTCACCTTGCCCATCTGGTTTCTGGGCATGTTTTCCACCAGGATCAGCCCTGTGGGAATGGTGTATGGAGCCATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219788 lncRNA upstream 3085 6978409 ~ 6978648 (+) True G193595
TU219787 lncRNA upstream 3551 6977931 ~ 6978182 (+) True G193594
TU219786 lncRNA upstream 18635 6962777 ~ 6963098 (+) True G193593
TU219753 lncRNA upstream 92950 6887300 ~ 6888783 (+) True G193574
TU219644 lncRNA upstream 210922 6770435 ~ 6770811 (+) True G193466
TU219793 lncRNA downstream 36421 7018544 ~ 7019087 (+) True G193600
TU219888 lncRNA downstream 86424 7068547 ~ 7150730 (+) True G193661
TU219875 lncRNA downstream 217036 7199159 ~ 7201422 (+) True CI01000043_07196847_07199775
TU219940 lncRNA downstream 426509 7408632 ~ 7445809 (+) True G193712
TU219865 lncRNA downstream 481424 7463547 ~ 7469047 (+) True G193641
CI01000043_06911881_06926878.mRNA mRNA upstream 54433 6911533 ~ 6927300 (+) True CI01000043_06911881_06926878
CI01000043_06844060_06880471.mRNA mRNA upstream 101235 6843771 ~ 6880498 (+) True CI01000043_06844060_06880471
CI01000043_06825336_06826471.mRNA mRNA upstream 154125 6824410 ~ 6827608 (+) True CI01000043_06825336_06826471
CI01000043_06794188_06795136.mRNA mRNA upstream 186541 6794091 ~ 6795192 (+) True CI01000043_06794188_06795136
CI01000043_06751472_06754745.mRNA mRNA upstream 225793 6751472 ~ 6755940 (+) True CI01000043_06751472_06754745
CI01000043_07036554_07036979.mRNA mRNA downstream 53808 7035931 ~ 7037666 (+) True CI01000043_07036554_07036979
CI01000043_07175996_07189256.mRNA mRNA downstream 193741 7175864 ~ 7189812 (+) True CI01000043_07175996_07189256
CI01000043_07196847_07199775.mRNA mRNA downstream 214724 7196847 ~ 7200070 (+) False CI01000043_07196847_07199775
CI01000043_07204216_07216573.mRNA mRNA downstream 222093 7204216 ~ 7217151 (+) True CI01000043_07204216_07216573
CI01000043_07243729_07244723.mRNA mRNA downstream 261606 7243729 ~ 7245140 (+) True CI01000043_07243729_07244723
TU219777 other upstream 46886 6931976 ~ 6934847 (+) True G193584
TU219592 other upstream 333391 6644141 ~ 6648342 (+) True G193422
TU219499 other upstream 671195 6310152 ~ 6310538 (+) True G193344
TU219250 other upstream 770840 6205688 ~ 6210893 (+) True G193125
TU218539 other upstream 1429109 5467317 ~ 5552624 (+) True G192489
TU219856 other downstream 509814 7491937 ~ 7492103 (+) True G193636
TU219850 other downstream 531816 7560159 ~ 7560328 (+) False CI01000043_07551619_07563172
TU219852 other downstream 531816 7652715 ~ 7652885 (+) True CI01000043_07650041_07652969
TU219858 other downstream 531816 7597853 ~ 7597959 (+) True G193636
TU219877 other downstream 533401 7544525 ~ 7544607 (+) True G193650

Expression Profile