RNA id: TU219940


Basic Information

Item Value
RNA id TU219940
length 400
lncRNA type read_through
GC content 0.36
exon number 2
gene id G193712
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 7408632 ~ 7445809 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTACAAATGTTTTGTTTTGAATCAGTGGTTTGAAGCGCCAAAGTCATGTGATTTCAGTAAATGAGGCTTCATTAAATCATTACGTACAAGTGTTTCGAAGTTTCAATAGTTCACGTGACTTTGGCAGTTTGATACACGCTCCGAACCACTGATTCGAAACAAAAGATTTGTAAAGCTTCAAAGCTTCATGAAGCAGTGTTTTAAAATCGCCCATCACTAGATATTGTTGAATAAAGTCGTTATTTTGTTTTTTTGGCGCACAAAAAGTATTCTCGTCACTTCATAACATTAAGGTTGAACCACTGTAGTCACATGAACTGTTTTAAATATGTCTTTAGTAGCTTTCTGGGCATTGAAAGTGTTAATTATCTTGCTGTCAATGCAGGCCTCACTGAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219875 lncRNA upstream 207210 7199159 ~ 7201422 (+) True CI01000043_07196847_07199775
TU219888 lncRNA upstream 257902 7068547 ~ 7150730 (+) True G193661
TU219793 lncRNA upstream 389545 7018544 ~ 7019087 (+) True G193600
TU219767 lncRNA upstream 426509 6981657 ~ 6982123 (+) False G193582
TU219762 lncRNA upstream 426509 6981733 ~ 6982123 (+) True G193582
TU219865 lncRNA downstream 17738 7463547 ~ 7469047 (+) True G193641
TU219889 lncRNA downstream 24381 7470190 ~ 7471580 (+) True G193662
TU219851 lncRNA downstream 46128 7491937 ~ 7492103 (+) False G193636
TU220006 lncRNA downstream 248673 7694482 ~ 7720234 (+) True G193773
CI01000043_07375020_07398849.mRNA mRNA upstream 9413 7375020 ~ 7399219 (+) True CI01000043_07375020_07398849
CI01000043_07301810_07355783.mRNA mRNA upstream 52849 7301810 ~ 7355783 (+) True CI01000043_07301810_07355783
CI01000043_07259451_07296086.mRNA mRNA upstream 111425 7259058 ~ 7297207 (+) True CI01000043_07259451_07296086
CI01000043_07246033_07248353.mRNA mRNA upstream 159509 7245758 ~ 7249123 (+) True CI01000043_07246033_07248353
CI01000043_07243729_07244723.mRNA mRNA upstream 163492 7243729 ~ 7245140 (+) True CI01000043_07243729_07244723
CI01000043_07446177_07452227.mRNA mRNA downstream 304 7446113 ~ 7452227 (+) True CI01000043_07446177_07452227
CI01000043_07452783_07459261.mRNA mRNA downstream 6482 7452291 ~ 7459980 (+) True CI01000043_07452783_07459261
CI01000043_07495007_07498279.mRNA mRNA downstream 46872 7492681 ~ 7498353 (+) False CI01000043_07495007_07498279
CI01000043_07506975_07515936.mRNA mRNA downstream 61042 7506851 ~ 7515957 (+) False CI01000043_07506975_07515936
CI01000043_07530040_07549512.mRNA mRNA downstream 83180 7528989 ~ 7549619 (+) False CI01000043_07530040_07549512
TU219777 other upstream 473785 6931976 ~ 6934847 (+) True G193584
TU219592 other upstream 760290 6644141 ~ 6648342 (+) True G193422
TU219499 other upstream 1098094 6310152 ~ 6310538 (+) True G193344
TU219250 other upstream 1197739 6205688 ~ 6210893 (+) True G193125
TU218539 other upstream 1856008 5467317 ~ 5552624 (+) True G192489
TU219856 other downstream 46128 7491937 ~ 7492103 (+) True G193636
TU219850 other downstream 68130 7560159 ~ 7560328 (+) False CI01000043_07551619_07563172
TU219852 other downstream 68130 7652715 ~ 7652885 (+) True CI01000043_07650041_07652969
TU219858 other downstream 68130 7597853 ~ 7597959 (+) True G193636
TU219877 other downstream 69715 7544525 ~ 7544607 (+) True G193650

Expression Profile