RNA id: TU220419


Basic Information

Item Value
RNA id TU220419
length 550
lncRNA type read_through
GC content 0.32
exon number 2
gene id G194116
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 7491945 ~ 7724924 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAAAATCAACCCCTGCAACATAAAAGTGACTGAAAGTTACATTTCCCAAACTCTGTCCAACCACTGATAATATAAAAATTACACAACAGCAACACATGATTTTTTTTCTCCCTTAAACGTTTGATATTCATTTTTGATTGTAGAGGTTAAAATATTTAGCGTTTATTTCCTCACTCTAAGCTCTCAACTTCATCTTAACATTCCCAGAATGTTCATTTCTAATTTCAAATAAAATCAGCTTCAAAATATTTTTCCCTAATTATTTAACTTCAAACTTTATTAGACCTTTAAACAATGTTGCGCTTCAAACAAAATCTCTGAATATGAAGAGAACTATCGGACACTAATAAGTACATAATGTGCCCTGATATGATGTATATAAAATCCTACCTTACAAAGGAAAATAATAAATCCCAACTGCACAAACTTCATTGTCTCCATTCAAATGTCTCAAACGTCCTTCAGGGATTACTTTCTTACTTGTTTTTAAGATTGTGCAGCTACTCGATTTATTGAGTTCCCCAAAATGCACACACATGAGGCGTTTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220187 lncRNA downstream 949106 6540013 ~ 6542839 (-) True G193907
TU220173 lncRNA downstream 998310 6493393 ~ 6493635 (-) True G193895
TU220113 lncRNA downstream 1139589 6352117 ~ 6352356 (-) True G193863
TU220112 lncRNA downstream 1139924 6351776 ~ 6352021 (-) True G193862
TU220111 lncRNA downstream 1140203 6350314 ~ 6351742 (-) True G193861
CI01000043_07464177_07486461.mRNA mRNA downstream 4801 7463755 ~ 7487144 (-) False CI01000043_07464177_07486461
CI01000043_07424769_07438909.mRNA mRNA downstream 53025 7424769 ~ 7438920 (-) False CI01000043_07424769_07438909
CI01000043_07418072_07421953.mRNA mRNA downstream 68055 7417406 ~ 7423890 (-) True CI01000043_07418072_07421953
CI01000043_07363226_07372771.mRNA mRNA downstream 119174 7363226 ~ 7372771 (-) True CI01000043_07363226_07372771
CI01000043_07251626_07257659.mRNA mRNA downstream 233344 7250942 ~ 7258601 (-) True CI01000043_07251626_07257659
TU220402 other downstream 13203 7478375 ~ 7478742 (-) True CI01000043_07464177_07486461
TU220206 other downstream 925906 6563340 ~ 6566039 (-) True G193922
TU219459 other downstream 1235666 6255572 ~ 6256279 (-) True G193313
TU219049 other downstream 1873505 5593681 ~ 5618440 (-) True G192947
TU219083 other downstream 2033531 5456497 ~ 5458414 (-) True G192980

Expression Profile