RNA id: TU220487


Basic Information

Item Value
RNA id TU220487
length 488
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G194183
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 7558487 ~ 7561540 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGGACCAATTTTTACTGGTTTCTCCTTGGGTCTCAACACTAAAGGGACCAGCATAAGGAGGTCCATCTTTGTCTGTTATAGAGAGAAGCACTGGGGCTGAACCACGATTGCAAATCTTTATATTCCTTTCATTAATGACAGGAGCGTTGTCATTTACATCCGACAACTCAATTATCAGGGTTCCAGTGCCTGTCGCTGGAGCATCACCATCATCCACAGCCAAAATGATAGCTCTGTATTTGCCATCTTTGACACTGGAAGATTCTCTATCCATAAGTTTCCTGACTTTAATCAATCCAGTGTCTTGATTTACACTCAGCCAGCCTTCAGGATCATTGCCAATTTTATACCTGGAAGGAACCAAAACATACAGGTTAAAACTAGAAACTTAATGTTGATTTTGACAGAGTCTTATCTGGATGTTTAAAACCATTTGAAGTTCAAAAGATATACAGGCATGTCATAATTTGAATTCTGGTTATAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220401 lncRNA downstream 59514 7496788 ~ 7498973 (-) True G194100
TU220403 lncRNA downstream 59854 7494997 ~ 7498633 (-) False G194100
TU220187 lncRNA downstream 1015648 6540013 ~ 6542839 (-) True G193907
TU220173 lncRNA downstream 1064852 6493393 ~ 6493635 (-) True G193895
TU220113 lncRNA downstream 1206131 6352117 ~ 6352356 (-) True G193863
TU220518 lncRNA upstream 103856 7665396 ~ 7696469 (-) False G194209
TU220520 lncRNA upstream 103856 7665396 ~ 7696469 (-) True G194209
TU220523 lncRNA upstream 112231 7673771 ~ 7684699 (-) True G194212
CI01000043_07464177_07486461.mRNA mRNA downstream 71343 7463755 ~ 7487144 (-) False CI01000043_07464177_07486461
CI01000043_07424769_07438909.mRNA mRNA downstream 119567 7424769 ~ 7438920 (-) False CI01000043_07424769_07438909
CI01000043_07418072_07421953.mRNA mRNA downstream 134597 7417406 ~ 7423890 (-) True CI01000043_07418072_07421953
CI01000043_07363226_07372771.mRNA mRNA downstream 185716 7363226 ~ 7372771 (-) True CI01000043_07363226_07372771
CI01000043_07251626_07257659.mRNA mRNA downstream 299886 7250942 ~ 7258601 (-) True CI01000043_07251626_07257659
CI01000043_07642034_07648935.mRNA mRNA upstream 80285 7641825 ~ 7649353 (-) True CI01000043_07642034_07648935
CI01000043_07697097_07700330.mRNA mRNA upstream 135056 7696596 ~ 7701211 (-) True CI01000043_07697097_07700330
TU220402 other downstream 79745 7478375 ~ 7478742 (-) True CI01000043_07464177_07486461
TU220206 other downstream 992448 6563340 ~ 6566039 (-) True G193922
TU219459 other downstream 1302208 6255572 ~ 6256279 (-) True G193313
TU219049 other downstream 1940047 5593681 ~ 5618440 (-) True G192947
TU219083 other downstream 2100073 5456497 ~ 5458414 (-) True G192980

Expression Profile