RNA id: CI01000046_00670755_00673139.mRNA



Basic Information


Item Value
RNA id CI01000046_00670755_00673139.mRNA
length 2693
RNA type mRNA
GC content 0.46
exon number 1
gene id CI01000046_00670755_00673139
representative True

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 670755 ~ 673447 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGAAGCCGTCATGCTGGTGGTTGATGTCTGTTTATGTCACGTGTTTACACCCATCTCTCGTTCTGGCCATTAAAAGGATCATAGTGAATTACTCATCTCAGAACCTGTCCTCGGTTCCTCCCGGCCTGAAACCATCTACAGAGGACTTGGATCTGTCGCTGAACCACATCCAGACGCTGAGCGGCAAAGACTTCAGCACTACACCACGACTCCATTTCCTCAATCTGTCCTGGAATATACTGGAAAACATAGACATGGACACATTTAACTCCACACCGGCTTTGGAGATTTTGGACCTGTCGCACAACAGACTCCAGAACCTCTCTGACCAACCATACCTGCTTAAGGCGGGAAATCTGCAGTTCTTAGACTTGTCATCCAACATGTTTTCCGTCATGGCACTAGGGAAGGAATTTTCTACCCTGAAACACCTGCAGTGGCTTGGCCTGAGTGCCATTTCAATCGGCAACGAAGACTTTACTTACATTGCCAATCTTACTTTGAAAACGCTCTTCATTAATACTGATAAGCTACAGAAGTATGAAGAGAGGAGTCTAATGGGTGCCCATGCAGAGAAGGCCGTCATCGCCCTGTCCAACAAAGACCTAGATATTGCAATCGCTGATGATGTTTTTGCATCATTTAAAGAGGTAGAATTCACCAAGATGGACAGCGAGATGAAGGTTCTCCAGCAGATATGCCAGCGAGGAACAGTACGCACCATTAGTCTAGAAATCTCCAAGGTAAAAACCACCTGGGAAGTTCTGACAGGCTGTGTAAACACAATACTGTCATCTGCCATTCAACAGCTTTCCTTCTCAGACCTTACCATGACAAAAATGATAGACGGCAGGCCTGTGTCCTCGAGCCGCTTGTTGGAGTCCTTCTCTACAAGAAGAGCGTCTGTAACCGAATTCATCTTCAACCAAACAGAGCTCTATGACTTCTTCATAAGCATGCCAGCGAGAAAAGTTAGTTTAACCCAAACGCCCATCATCTTTATGACCTGCCCTCAGACTGTTAGCAAGATCGAGGTGTTGGACTTGTCCGATTGCGCCCTTACGGAAAACATCTTCTCGGTTGGTCCAGATACAGAATGTAGTACACTAACAAACCTGGAAAGTCTGGTTCTGAGGGGCAACAACCTGAAACATCTTGGACCGCTGACCTCCAGAATCCATCTCATGAGCTCACTGAAATACGCTGACTTCAGTCAGAACAAGCTTACTTATTCCGAGGAACAAGGCAAGTGCGTTTGGCCTCGCAAAGTTGCCCACGTGGATTTGTCCTCAAATGGGTTTGACCAGAGCATCTTCAAGTGTTTGCCCGATTCCATAAGAATCTTAAACCTCCGGAATAATCGAGTGACCACAGTCCCTGCAGATGTTGGGGTCTTAGAAGACTTGAGCATCCTGGACCTAGCAGATAACCGCTTGCTGGACCTTCCCACTTGTCAAGCATTCCCAAACCTGCAGAAGCTCCAAGTAAGAACAAACTCCATCCATTCGCCTTTACCGGGAACCCTCGAGACTTGTCCTTATCTCAAAGATCTCGACTTGAGCCGCAACCCCTTCATCTGCACTTGTGCTTTGCGAGAATTCGCAGCTCTCATCAAAAACCAAGCAACACAAACTCCTGGTGTGACTCTCGGCCACTGGCCGGAAGGATATCAATGTAGTTACCCAGAATCCAGGAGCAACACCATGCTAAAAGACTTCTACCTTCCTGAGATATCCTGTGATGGCTGGATCCTGGCTGTTACGATTCTGATCCCGACAATCACTCTGGTAGTTGCCATCAGCCTTCTTTGCCATCGGCTGGACGTGCCGTGGTATCTCAAGATGATGTGGAAATGGACACGCGCCAAGCACCACGCAATAACCTCCCAGAAGAAGACTGAGGATATGGAGGGGTTGCGCTTTCATGCGTTCATATCGTACAGCCAAAAGAACGCAGACTGGGTCAAAGCTCAATTTCTTCCCAAGCTCGAGGGCGATTGTGGGTTGCGAGTTTGTCACCACGAGCGGGACTTTATCCCGGGAAAGACGATCGTTCAGAACATCCTCCGATGCATCGAGCACAGCAGAAGGTGCGTCTTCGTGCTGTCGTCACATTTCGTCCAGAGCGAATGGTGCCATTACGAGCTCTACTTCGCCAATCACCAGAGGGTAATGCGAGGGATGGATAGCATCCTCCTTATTCTGCTGGAACCTCTGCCGTTATATCTCATTCCCTCCAAGTACTACCAACTCAAGGCCATGATGTCCAGACGCACATATCTAGAGTGGCCACAGGAAGGAGCCAAGCAGAAGCTGTTTTGGGCAAATCTCAGAGCAGCTCTGCAGGCCAACCTTCCCATTCCATCAGAGAGAGAAGAAGAGTGATGAGAGGAGTTTTACAAATTTATTTCATAGAGATTGTCTTAGCATATATTTATTTAGAGCAGTGGATCTCAACAAGGGTTCCAGGGTCCACTAGGGGGCCTCAACAAAACAAGATAAAACTAATCTAAAATCAAGATATTTCTAATTTTAATTCACCACCTCAACCTGGATACAAGAGGTAGCCTAATTTTAAAAGTGTGACTTCTAGTCCTGGAATATTGAGGGATTTAGCAAACTAAATAAAATAAATAAATAAATAAATAAATAAATACATAATGGAATTCTTAAATAAGCCATGTAATGTTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU221248 lncRNA upstream 6631 661987 ~ 664124 (+) True G194803
TU221220 lncRNA upstream 51350 589570 ~ 619405 (+) True G194780
TU221217 lncRNA upstream 82265 588125 ~ 588490 (+) True G194779
TU221158 lncRNA upstream 142205 525972 ~ 528550 (+) True CI01000046_00499754_00526138
TU221157 lncRNA upstream 143270 525972 ~ 527485 (+) False CI01000046_00499754_00526138
TU221266 lncRNA downstream 3938 677385 ~ 677650 (+) True G194809
TU221174 lncRNA downstream 8256 681703 ~ 682678 (+) True G194739
TU221268 lncRNA downstream 10341 683788 ~ 684595 (+) True G194810
TU221133 lncRNA downstream 13557 687004 ~ 759690 (+) False G194716
TU221129 lncRNA downstream 27719 701166 ~ 703152 (+) False G194716
CI01000046_00499754_00526138.mRNA mRNA upstream 143697 499754 ~ 527058 (+) False CI01000046_00499754_00526138
CI01000046_00494421_00496860.mRNA mRNA upstream 173797 494421 ~ 496958 (+) True CI01000046_00494421_00496860
CI01000046_00492034_00493262.mRNA mRNA upstream 177417 492034 ~ 493338 (+) True CI01000046_00492034_00493262
CI01000046_00477221_00481241.mRNA mRNA upstream 189512 477221 ~ 481243 (+) True CI01000046_00477221_00481241
CI01000046_00436111_00443677.mRNA mRNA upstream 225257 436111 ~ 445498 (+) False CI01000046_00436111_00443677
CI01000046_00770575_00774675.mRNA mRNA downstream 97128 770575 ~ 776269 (+) True CI01000046_00770575_00774675
CI01000046_00781088_00781355.mRNA mRNA downstream 107641 781088 ~ 781355 (+) True CI01000046_00781088_00781355
CI01000046_00784993_00786387.mRNA mRNA downstream 111198 784645 ~ 787080 (+) True CI01000046_00784993_00786387
CI01000046_00893353_00931079.mRNA mRNA downstream 219852 893299 ~ 932443 (+) True CI01000046_00893353_00931079
CI01000046_01026787_01028640.mRNA mRNA downstream 353055 1026502 ~ 1028869 (+) True CI01000046_01026787_01028640
TU221152 other upstream 210410 458008 ~ 460345 (+) True G194721
TU221488 other downstream 487710 1161157 ~ 1161690 (+) True G195003
TU222216 other downstream 866047 1542931 ~ 1563337 (+) True G195643
TU222565 other downstream 1199348 1872795 ~ 1873083 (+) False G195965
TU222567 other downstream 1199348 1872795 ~ 1959148 (+) True G195965
TU222725 other downstream 1766470 2439917 ~ 2440072 (+) False G196108

Expression Profile