RNA id: CI01000046_00784993_00786387.mRNA



Basic Information


Item Value
RNA id CI01000046_00784993_00786387.mRNA
length 1605
RNA type mRNA
GC content 0.39
exon number 5
gene id CI01000046_00784993_00786387
representative True

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 784645 ~ 787080 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTTAAATATTGTTCCTGTTACATTTATATAACATGACCAGCCTCTTATTTCCTTGATACTGCAATGTGAAGAGCGACTGATGAGACGCTACAGCACACATGGGTAACTATTTATGTCAGTTTTAACCATTTATTATTATTTACTGTCTATGATATTTACTGTCTATTCACATTGTAATTGCGCTGGGGTTAAATAGTATTTTTCATATCAGGAAAGAAACTTTCTAATGAACAGTTCTGTATTCTTGACAAGACGCTCTCATTAAGCTGTGAAGCCCTATTGCATGTCTTTCAGAGAGGACACTATGAAGGTTTGAGGCTCTCTGAGGTTTAAGTGAGCTGCCGAACATGCCTCAATCTGATGAGCATTTGTCGAGTATCTTCGAAGAGCTGAGCAAGCTGTCCTTTCGCAGACAGCAGCTCACGGACCGACGGAATGTCCTGGCCATGCTCATCCAATTCAAGCGAAACAACGGCCAAAATGAGCAACAGTATTCCAAAGAAACTGGAGAACTTCAACAAATTGACGAGGAGCTTAAAGTTCTTTCTGACAGGAAGATTGAACTTGAGGAAGAGCAAGAGGCGGGCTCCCATTTAATAGACACAACTAGGTCATCTAGCGTCATATTTGTGGACAACCCACCTCCGTTTCCAGCTCCGCAGGTTATTGTGGATTTGAACCAACTTCCTCGACACCCCTCTCAGACACAGTGTCAGTTCTGTCGCCAATATGTAACCACTGAGGTCATGACCAAAGCTGGCAGTGTGACCTATCTTATATGTTTTATTTCCATGGTTTTTTGTTGTATCGCTGGCTGCTGTCTAATCCCATTCTGCGTGGATTCCTGCAAGGACGTCATTCACAAATGTCCAAAATGTCGCAGTAACATACACACGTGCAAAAAGTTATGAGGAAAGGAATTCTAATAATGGCAGTTGAACTGAATCTGCATCTGAAGAATCTTATTTTTGATTATCGCACACAACTAAGTGGCTGGAATTGTTTCGGATATGTCATCCTGACCTTTTTACAGGGACAATCCCCATGGAATTACCTGCGTGCCTTTCTTACAGGATACAACTGTGAAATCTGATATTGTTTACTCTCTGCAGGGACCAAGCCAACCTTTCGGTTAGCCTGAAAACTGCCCAACTATCTAAACTGAAAGGAAAATGGAATATATCTGGATCTTCAGGGTGACTTCCCAGTCTTCTGGTTTGAACTTCAATGCTACGTTTTTTTTTGGGGTTATTTTTTTAAGCATTAAACTTTAACAGGAACATAAAAAATGGAATCAAGACGCAAGACTATGTGACCAAATTCCTGATTGCTTTTGGATGTAATAGAGTAGGAGTTCTTCAGCTGATAAAAAGGAATTCAAAATGATTATATCTTATTTTGTAGACCATAAGTTATGAACTTTCCTTTGAGAAAAATATTATCTCTGGTAAAATGTCAAATGTTAAGTTTATTTATTGTGTTGTCAGCTTGCTTTGGATCATAACGCAGAGCTGGAACATGGTTCTGTGCTTTGGAGGGCCAAACAAGTCATTTCAGTGATTTCAAATACAGAAACATTTTAATGATAAAAGGCTGTATATACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU221137 lncRNA upstream 24955 701166 ~ 759690 (+) True G194716
TU221169 lncRNA upstream 40731 722652 ~ 743914 (+) True G194734
TU221131 lncRNA upstream 51865 701166 ~ 732780 (+) False G194716
TU221132 lncRNA upstream 78246 701166 ~ 706399 (+) False G194716
TU221135 lncRNA upstream 78246 701166 ~ 706399 (+) False G194716
TU221282 lncRNA downstream 12214 799294 ~ 800928 (+) True G194823
TU221434 lncRNA downstream 238753 1025833 ~ 1026053 (+) True G194964
TU221440 lncRNA downstream 249473 1036553 ~ 1036803 (+) True G194968
TU221449 lncRNA downstream 285245 1072325 ~ 1072586 (+) True G194977
TU221451 lncRNA downstream 286305 1073385 ~ 1073664 (+) True G194979
CI01000046_00781088_00781355.mRNA mRNA upstream 3290 781088 ~ 781355 (+) True CI01000046_00781088_00781355
CI01000046_00770575_00774675.mRNA mRNA upstream 8376 770575 ~ 776269 (+) True CI01000046_00770575_00774675
CI01000046_00670755_00673139.mRNA mRNA upstream 111198 670755 ~ 673447 (+) True CI01000046_00670755_00673139
CI01000046_00499754_00526138.mRNA mRNA upstream 257587 499754 ~ 527058 (+) False CI01000046_00499754_00526138
CI01000046_00494421_00496860.mRNA mRNA upstream 287687 494421 ~ 496958 (+) True CI01000046_00494421_00496860
CI01000046_00893353_00931079.mRNA mRNA downstream 106219 893299 ~ 932443 (+) True CI01000046_00893353_00931079
CI01000046_01026787_01028640.mRNA mRNA downstream 239422 1026502 ~ 1028869 (+) True CI01000046_01026787_01028640
CI01000046_01067894_01070331.mRNA mRNA downstream 279856 1066936 ~ 1070777 (+) True CI01000046_01067894_01070331
CI01000046_01149090_01159654.mRNA mRNA downstream 361856 1148936 ~ 1160102 (+) True CI01000046_01149090_01159654
CI01000046_01246234_01251650.mRNA mRNA downstream 458652 1245732 ~ 1251689 (+) True CI01000046_01246234_01251650
TU221152 other upstream 324300 458008 ~ 460345 (+) True G194721
TU221488 other downstream 374077 1161157 ~ 1161690 (+) True G195003
TU222216 other downstream 752414 1542931 ~ 1563337 (+) True G195643
TU222565 other downstream 1085715 1872795 ~ 1873083 (+) False G195965
TU222567 other downstream 1085715 1872795 ~ 1959148 (+) True G195965
TU222725 other downstream 1652837 2439917 ~ 2440072 (+) False G196108

Expression Profile