RNA id: CI01000046_01047300_01066367.mRNA



Basic Information


Item Value
RNA id CI01000046_01047300_01066367.mRNA
length 2370
RNA type mRNA
GC content 0.51
exon number 16
gene id CI01000046_01047300_01066367
representative True

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1047209 ~ 1066367 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTGCTCATATTGGCCTTGCAGCGGCGCGCGAGAGCATGAGTAGACGAGAGGGTCCCCGCGCACGCGCTATTATTGTTTTGACTGAAAATGCCGTCGGTTTCGAAAACGGCGGCGAGCGCTTCTCCTCAAACCGAGAAACCAACCCACTATACCACAAATGCACACAGCATAGACCCTTTACGTGTTTCCACTGGCATTTTCTAAACCAGCGAAGACGGAGACCTATACGGAGAAGAGACGGGACTTTTAATTACAGCCCAGATGTGTATTGTACGAAGTATGATGAAACTACAGGAATATGTCCCGATGGAGACGATTGCCCTTATTTACACCGGACCACCGGTGACACAGAGCGCAAGTACCATTTACGCTACTACAAGACCGGCACCTGCATCCATGAGACAGATGCTCGTGGACATTGTGTGAAGAATGGCCTCCACTGCGCCTTCGCTCATGGACCACATGACCTTCGGCCACCGGTTTATGATATCAGAGAGATCCAGGCACAGGAAGCTCTGCAGAATGGCCAGTTGGGATCTGGGGAGGGAATTCCTGACCTGCAGCCGGGTGTGCTGGCCAGCCAGGCCATGATTGAGAAGACCCTAAATGAAGACCCACGTTGGCAAGACACCAATTTTGTTTTGGCCAACTACAAAACTGAGCAGTGCACCAAGCCTCCACGTCTATGCAGGCAGGGCTATGCCTGTCCCCACTATCACAACAGCAGAGATAGGAGAAGAAATCCCAGAAAGTTCAAATACAGGTCGACGCCCTGCCCGAGTGTAAAGCACGGTGATGAATGGGGCGAGCCCTCCAAGTGTGAGAGTGGGGACAGCTGTCAGTACTGCCACTCTCGCACCGAACAGCAGTTCCACCCAGAGATTTACAAATCTACTAAATGCAACGACATGAGGCAAACTGGATACTGTCCAAGGGGACCATTCTGTGCTTTTGCACATGTGGAAAGAATTCCTTCCACAGAGGAGACCATGAGCACGTTGCTCTCAGCAATGCAGTCGGGCTCTCAGTCCAAGCTGGGCTCCCAGCAGTATCCAGAGTGTCCAATCAACGAGTGGAGCGCCAACACGAATTCCATCACCAGCAGCGCGAGTAACAACGGCCAGACAGGAAACGTATCATGCTCTAATAGTCCGACTGTAACACCAAGCTCAGGGAGCAACAGTTCTTTGTCCCCAATTGGACCCATCGGCAGGCCAAAATGCTTTACTAATGGTAGCTTATGTTCAGAGTCCACCACGTCCAGTGTTTCCTCTCCGACGTCTAACTATCCCAAAGCTCCGGGTTTTGAACGGGAGGATCAGGCAAAGAACCAGAAGAGCCAGTCTGGGGAAAATAATCAAAAGTTAATGGACCAAGACAAACAGGCTCACGGCGGTGTGTTCTCAGTTGTGAACCCACTAGCGTCCAGCATTACATCGAGCATCACGTCCAGCTTGGCCTCCAGTATCGGATCTGACAGTTCGTCGCCCACCACTTTATCAACCATGAATGCAAAAGCTACGCCTTTTTATCCAGGCAGCAATACTGTGGAGTCTGTAATAGGATCTGCACTTGACCTAAATTTTAGTGACATCAATGTTGCCTCCCTCGACAAAGAGCTAGAGGACCAGGACAACAATGGCCTTGGTTTAACAAGTCTGAATGGCGGAGCAGGGAGTATATGGGACTTTATGAGTGGCAGCTTCTCTCCCAGCCCGTCTCCAGTGTTCAGCAGCCTTACTTCCAGCACGGTCGGCTCCAGCAGCGCAGACATCGGCCGGCTCCTCCGAGAACTGGATGAAGCCAAGCGCAAGATAAAGCAATGGGAGGAGGCCTGGCACCAAGTCAAACAGGCCTGTGAAGCGTGGCAGAAAGACGCTCACGAAGCGAAAGAACAAGCTAAATCGGCAGAGGCGGAGCGGCAGTTGGCAGAGCAAAAGCGAGAGGACACCGAGCGCAAGCTGAAGGAACTGCAGGGAGACTTTGACGTTTTGTGTCGCTCCCCCAACACGCCTCTCCTGCGCAGCTACGGCGAGCTGGACCAGCTCCCTCTGCCAAAGCTCCGCTCCATCCAGAGCCAGCTGCGCTCTGACCTAGACCTCATAGACGGGGTAATATATCAGCTTCAGTCAAAGAAATGTATAGTTTGCCAAAAGCATGATCGTTCCATTGTCCTGCAGCCTTGCCAACATTATGTACTTTGTCAGAACTGTGCGTCTGGTAAAACGGAATGTCCTTACTTATTTCATATAGTGATTCAATTGATTTTGTTTTATTAGAATCTAAGTGGTGTTTGACTGATACAAGTTCTTAAATGCAATACCTGTTCTGTACAAGCTAGATTTTTATCCATTTTCATAAAGCATTAAA

Function


GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU221843 lncRNA downstream 113601 873108 ~ 933608 (-) True G195307
TU221870 lncRNA downstream 143433 903376 ~ 903776 (-) True G195333
TU221815 lncRNA downstream 206517 840427 ~ 840692 (-) True G195282
TU221813 lncRNA downstream 207506 839364 ~ 839703 (-) True G195280
TU221592 lncRNA downstream 266916 774434 ~ 780293 (-) False CI01000046_00777923_00780186
TU221950 lncRNA upstream 18477 1084844 ~ 1085092 (-) True G195403
TU221961 lncRNA upstream 53357 1119724 ~ 1119925 (-) True G195412
TU221970 lncRNA upstream 76718 1143085 ~ 1143475 (-) True G195421
TU221971 lncRNA upstream 77147 1143514 ~ 1143752 (-) True G195422
TU221975 lncRNA upstream 85007 1151374 ~ 1151694 (-) True G195426
CI01000046_00790248_00814884.mRNA mRNA downstream 232325 790183 ~ 814884 (-) True CI01000046_00790248_00814884
CI01000046_00777923_00780186.mRNA mRNA downstream 267023 777672 ~ 780186 (-) False CI01000046_00777923_00780186
CI01000046_00749734_00763064.mRNA mRNA downstream 283728 749684 ~ 763481 (-) True CI01000046_00749734_00763064
CI01000046_00702360_00703954.mRNA mRNA downstream 343255 701939 ~ 703954 (-) True CI01000046_00702360_00703954
CI01000046_00690567_00697727.mRNA mRNA downstream 347337 690140 ~ 699872 (-) True CI01000046_00690567_00697727
CI01000046_01074910_01076076.mRNA mRNA upstream 8431 1074798 ~ 1076424 (-) True CI01000046_01074910_01076076
CI01000046_01098117_01099160.mRNA mRNA upstream 30891 1097258 ~ 1099160 (-) True CI01000046_01098117_01099160
CI01000046_01167146_01194022.mRNA mRNA upstream 100661 1167028 ~ 1194022 (-) True CI01000046_01167146_01194022
CI01000046_01236373_01241067.mRNA mRNA upstream 169625 1235992 ~ 1241067 (-) True CI01000046_01236373_01241067
CI01000046_01421301_01451701.mRNA mRNA upstream 354145 1420512 ~ 1451931 (-) True CI01000046_01421301_01451701
TU221589 other downstream 266916 777733 ~ 780293 (-) True CI01000046_00777923_00780186
TU221617 other downstream 371081 670736 ~ 676128 (-) True G195098
TU221615 other downstream 620883 407423 ~ 426326 (-) False G195097
TU221614 other downstream 620883 407470 ~ 426326 (-) True G195097
TU221564 other downstream 981298 63699 ~ 65911 (-) True G195066
TU223112 other upstream 1101899 2168266 ~ 2168644 (-) True G196463
TU224633 other upstream 1799892 2866259 ~ 2867794 (-) True CI01000046_02866255_02867695
TU225032 other upstream 2691256 3757623 ~ 3800101 (-) False G198265
TU225919 other upstream 5030992 6097359 ~ 6097674 (-) True G199054
TU225878 other upstream 5297811 6364178 ~ 6375406 (-) True G199014

Expression Profile


CI01000046_01047300_01066367.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

CI01000046_01047300_01066367.mRNA Expression in each Bioproject

Bar chart with 44 bars.
CI01000046_01047300_01066367.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 500.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050533 True 7406 mRNA 0.39 15 NC_007114.7 45778810 ~ 45818361 (+)
bowfin (Amia calva) AMCG00018186 True 3035 mRNA 0.51 17 CM030135.1 4033690 ~ 4057473 (-)