RNA id: CI01000046_01149090_01159654.mRNA



Basic Information


Item Value
RNA id CI01000046_01149090_01159654.mRNA
length 992
RNA type mRNA
GC content 0.45
exon number 4
gene id CI01000046_01149090_01159654
representative True

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1148936 ~ 1160102 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATTAAAATCACACTTTTTTCTTTTAAACCTGTCAGTGCATTGACTTATTTCTATTTTAAAATGTGTAAAATTCAATTTTTGCAATAAACATTGACATTATGGAACTTTTGTGCTGTTTAATTGCATCAGATCTGATACTAATCTATGTAACCATGGGGGCTCTTCAGAACCTGGACAAGATCATAAAAACTGTATTGCATTGTATTGAAGGAGCTCTGGCAGCCACAAAGGAGTCTCTGTGTCGGTCTATCCTCACCCCAGCTCTCCCAACCTTCCTTTCTGAACTGCTTAATTACCCTGACGCCACTTCCAATCTGCAGCCCACCTGTGGCCTTCTGCCAAAGGTCCTTTCAACAGAACAGACAAGAGCCATACAAGCTGGCCCCTGCGATTCGGGACGGTTCCCCACCAAGATCCTACTCTGCAGCAGGCGTCCCAAGCACCATGTGGCCCTCACACATGCACTCAGAAGAGGGCCTCGCTCCCCCACAGAGAGATCCACATCCAGGACAGAGTCTTCAACGCCCCTGAGCGAGTGCTGAGGGGGGTTACAAAGGCCCGTTGCATCTGTCTCCTTTAACAACACTACATCCAGGAAGTTCAGGCTGGATGAGGACCATGTGTAAGGAGATGTCCATCATGACTAACATGTGTGACAAGTGGAATGGAAATGCAATTAGCCCTCCCCCCACCACCAGACACGGCTTGGCCTGTTATGTGTTAATAATGTGATGTAATGGTCATAAGGATATAACAGTTCCTGTACGTGACATCAGGGAATCTCATCTATATCCTCCCAGAACATCTAAAGGAACATGTGAGTGAACAAGTGCTTTAGGGGAATGAGTGAGTCAGTGAGTAAGCAAGAACATAAATCAGTTGCTCTTTTCCAAATCTTAGTTGACTGCCTACAGAGGCAGCATTTAAAGGAATCATTACTTCTTGTTTGTTACATGAAGGCTGTATCGAAAATATATGCGACTTATTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU221500 lncRNA upstream 1381 1147007 ~ 1147555 (+) True G195015
TU221463 lncRNA upstream 58508 1090216 ~ 1090428 (+) True G194991
TU221460 lncRNA upstream 62140 1086531 ~ 1086796 (+) True G194988
TU221459 lncRNA upstream 62537 1086167 ~ 1086399 (+) True G194987
TU221451 lncRNA upstream 75272 1073385 ~ 1073664 (+) True G194979
TU221530 lncRNA downstream 46343 1206445 ~ 1208328 (+) True G195038
TU221539 lncRNA downstream 67383 1227485 ~ 1227867 (+) True G195047
TU221540 lncRNA downstream 68614 1228716 ~ 1228919 (+) True G195048
TU221541 lncRNA downstream 69126 1229228 ~ 1229433 (+) True G195049
TU222096 lncRNA downstream 224650 1384752 ~ 1384970 (+) True G195535
CI01000046_01067894_01070331.mRNA mRNA upstream 78159 1066936 ~ 1070777 (+) True CI01000046_01067894_01070331
CI01000046_01026787_01028640.mRNA mRNA upstream 120067 1026502 ~ 1028869 (+) True CI01000046_01026787_01028640
CI01000046_00893353_00931079.mRNA mRNA upstream 216493 893299 ~ 932443 (+) True CI01000046_00893353_00931079
CI01000046_00784993_00786387.mRNA mRNA upstream 361856 784645 ~ 787080 (+) True CI01000046_00784993_00786387
CI01000046_00781088_00781355.mRNA mRNA upstream 367581 781088 ~ 781355 (+) True CI01000046_00781088_00781355
CI01000046_01246234_01251650.mRNA mRNA downstream 85630 1245732 ~ 1251689 (+) True CI01000046_01246234_01251650
CI01000046_01255895_01262232.mRNA mRNA downstream 95793 1255895 ~ 1262547 (+) True CI01000046_01255895_01262232
CI01000046_01275798_01283718.mRNA mRNA downstream 115696 1275798 ~ 1284100 (+) True CI01000046_01275798_01283718
CI01000046_01289846_01293954.mRNA mRNA downstream 129466 1289568 ~ 1294336 (+) True CI01000046_01289846_01293954
CI01000046_01318513_01343464.mRNA mRNA downstream 156568 1316670 ~ 1344195 (+) True CI01000046_01318513_01343464
TU221152 other upstream 688591 458008 ~ 460345 (+) True G194721
TU221488 other downstream 1055 1161157 ~ 1161690 (+) True G195003
TU222216 other downstream 379392 1542931 ~ 1563337 (+) True G195643
TU222565 other downstream 712693 1872795 ~ 1873083 (+) False G195965
TU222567 other downstream 712693 1872795 ~ 1959148 (+) True G195965
TU222725 other downstream 1279815 2439917 ~ 2440072 (+) False G196108

Expression Profile