RNA id: CI01000046_01255895_01262232.mRNA


Basic Information

Item Value
RNA id CI01000046_01255895_01262232.mRNA
length 1086
RNA type mRNA
GC content 0.41
exon number 3
gene id CI01000046_01255895_01262232
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1255895 ~ 1262547 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGAACTTAACGCCAGTTCACAGGGTAAAACATGCTTCTCAAATCTACACTTTCAGTCACAATGGATTTTACATGTACACGTATCATTTCTCTTGGACTAATGGATATGAAGATGAACACTATGGACCTTATCTACCCTTCACGTACACATTCCTGTACTACAAAGATGGAGATAATGACAGCGAGGTCAGTGTTCATCCAGAAAATAAAATGATTCAGATTGATGAAAAGGAGCTTGATCCGGGCACTACATACACTGCTATGTGTTGGGTTTTGGCAAAAAGTCCTTTACAAGACTTTCATGTTTTGGAAGACTTTTCAACAATCGACAAGATTTCCGAGGTCATGATGACTACACTACAGGATGAGGAAGAGAAAACGGGCATGTATCCCGCTGCACAATGCCATCAACCCTATGTGGGCCCCACAGCTGAGGTCTGGGTCCCACGCCAAATGCCCGATACGTGCAGTGAGACGAGTATCCCGTGTGAGGAATTTTCTTTGCTCTGTGAAGAGTTGCCAGATAAAGTGCATGACATCATGCAGTCTCTCGGTGTGGCGTGTCTGAGTGGGGATGTTCTGTCTCTGAAGGACTCTGCTCTTAGTCTTGAGAGTCTTGAGGACTGTGAGGAATCTGAAGCACCAGTTATCATTAACCCAGTGCCTGTGTGTTCCAAACAAGACTACTGCACTCTTACCAACACTCCCACAGGCCCTGTCTTCACCTTCACCAGAGATATAGAGCTGGACGAAAACACCTTTAGTGATTAAATGCATGAAGACACCTGCAGTAGACACGTGGACATTATGAACTGACATAAATCATTTATTCACATTTTGATTGTGTAAAATGTATGTTGTAGAACAAAATGTGAAGGTCTTTTCAAATAATGTTAACAAGGAATTCTTATTCTTCACTGAAACAAGTTGTCTAGGCTACAAGGTGTTAAAATAGCCATTATACTCCCTCCACTAATGCTGACAGTTCAAATGAGGTTTGACGATTCGTGTGCAGCGATTTGATTCTGTTTTTCATCAAGTAATATCATTATATTTCTATTTGTGATATTTGTACCTAGAAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221541 lncRNA upstream 26462 1229228 ~ 1229433 (+) True G195049
TU221540 lncRNA upstream 26976 1228716 ~ 1228919 (+) True G195048
TU221539 lncRNA upstream 28028 1227485 ~ 1227867 (+) True G195047
TU221530 lncRNA upstream 47567 1206445 ~ 1208328 (+) True G195038
TU221503 lncRNA upstream 98563 1157127 ~ 1157332 (+) True G195018
TU222096 lncRNA downstream 122205 1384752 ~ 1384970 (+) True G195535
TU222125 lncRNA downstream 134216 1396763 ~ 1397086 (+) True G195564
TU222506 lncRNA downstream 481253 1743800 ~ 1744017 (+) True G195909
TU222644 lncRNA downstream 603957 1866504 ~ 1866807 (+) True G196035
TU222647 lncRNA downstream 608151 1870698 ~ 1870980 (+) True G196038
CI01000046_01246234_01251650.mRNA mRNA upstream 4206 1245732 ~ 1251689 (+) True CI01000046_01246234_01251650
CI01000046_01149090_01159654.mRNA mRNA upstream 95793 1148936 ~ 1160102 (+) True CI01000046_01149090_01159654
CI01000046_01067894_01070331.mRNA mRNA upstream 185118 1066936 ~ 1070777 (+) True CI01000046_01067894_01070331
CI01000046_01026787_01028640.mRNA mRNA upstream 227026 1026502 ~ 1028869 (+) True CI01000046_01026787_01028640
CI01000046_00893353_00931079.mRNA mRNA upstream 323452 893299 ~ 932443 (+) True CI01000046_00893353_00931079
CI01000046_01275798_01283718.mRNA mRNA downstream 13251 1275798 ~ 1284100 (+) True CI01000046_01275798_01283718
CI01000046_01289846_01293954.mRNA mRNA downstream 27021 1289568 ~ 1294336 (+) True CI01000046_01289846_01293954
CI01000046_01318513_01343464.mRNA mRNA downstream 54123 1316670 ~ 1344195 (+) True CI01000046_01318513_01343464
CI01000046_01540075_01668012.mRNA mRNA downstream 277528 1540075 ~ 1668012 (+) False CI01000046_01540075_01668012
CI01000046_01865451_01881353.mRNA mRNA downstream 602904 1865451 ~ 1881369 (+) False CI01000046_01865451_01881353
TU221488 other upstream 94205 1161157 ~ 1161690 (+) True G195003
TU221152 other upstream 795550 458008 ~ 460345 (+) True G194721
TU222216 other downstream 276947 1542931 ~ 1563337 (+) True G195643
TU222565 other downstream 610248 1872795 ~ 1873083 (+) False G195965
TU222567 other downstream 610248 1872795 ~ 1959148 (+) True G195965
TU222725 other downstream 1177370 2439917 ~ 2440072 (+) False G196108
TU223597 other downstream 1924448 3186995 ~ 3194271 (+) True G196936

Expression Profile