RNA id: TU222565


Basic Information

Item Value
RNA id TU222565
length 181
RNA type TUCP
GC content 0.39
exon number 2
gene id G195965
representative False

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1872795 ~ 1959148 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGAACCCATGTGTTTAATTTGTCTACAGCGTGGTTAGTTAAATCGATTTATTTCATTTTTACTTTGCGGACGAGGCAACGAACTGTCAGACAGTTACAGTCAAAAGGATGTACAGGATGTTTTCCACATTTCTTCTTTGTCAGATCATCATCACACTCATCTGCCAAACACTTTGTTACGAACCCACAGAGAAGGACTTGAAGTGTTTCAATGACTATGAGACAGAAATGAAGTGCAGTTTTGAGTCTGACGGCCTCATAAGTTGCTCTGGATACAAACTCAATATCACACGTAATGAAGCAGATGTGTTAAAAGAATATACATGCATCTTTGAGAGAAGTCATCACAGTCCCAGTTGTGAATGTAAAATTGAAGTCCAAGGGTTTTCTACTTCTGAGATATTCACTACTACACTTCTGGAAGGAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222647 lncRNA upstream 1815 1870698 ~ 1870980 (+) True G196038
TU222644 lncRNA upstream 5988 1866504 ~ 1866807 (+) True G196035
TU222506 lncRNA upstream 128778 1743800 ~ 1744017 (+) True G195909
TU222125 lncRNA upstream 475709 1396763 ~ 1397086 (+) True G195564
TU222096 lncRNA upstream 487825 1384752 ~ 1384970 (+) True G195535
TU222568 lncRNA downstream 13376 1888077 ~ 1959148 (+) True G195965
TU222659 lncRNA downstream 86518 1961219 ~ 1961759 (+) True G196050
TU222660 lncRNA downstream 87545 1962246 ~ 1962532 (+) True G196051
TU222580 lncRNA downstream 92031 1966732 ~ 1968371 (+) True CI01000046_01963803_01965901
TU222587 lncRNA downstream 122422 1997123 ~ 1999094 (+) True G195978
CI01000046_01540075_01668012.mRNA mRNA upstream 204783 1540075 ~ 1668012 (+) False CI01000046_01540075_01668012
CI01000046_01318513_01343464.mRNA mRNA upstream 528600 1316670 ~ 1344195 (+) True CI01000046_01318513_01343464
CI01000046_01289846_01293954.mRNA mRNA upstream 578459 1289568 ~ 1294336 (+) True CI01000046_01289846_01293954
CI01000046_01275798_01283718.mRNA mRNA upstream 588695 1275798 ~ 1284100 (+) True CI01000046_01275798_01283718
CI01000046_01255895_01262232.mRNA mRNA upstream 610248 1255895 ~ 1262547 (+) True CI01000046_01255895_01262232
CI01000046_01903950_01922429.mRNA mRNA downstream 27389 1902090 ~ 1922439 (+) True CI01000046_01903950_01922429
CI01000046_01933932_01935589.mRNA mRNA downstream 58189 1932890 ~ 1937822 (+) True CI01000046_01933932_01935589
CI01000046_01963803_01965901.mRNA mRNA downstream 88854 1963555 ~ 1967052 (+) False CI01000046_01963803_01965901
CI01000046_01988070_01995034.mRNA mRNA downstream 111619 1986320 ~ 1995330 (+) True CI01000046_01988070_01995034
CI01000046_02006028_02024639.mRNA mRNA downstream 131327 2006028 ~ 2024940 (+) True CI01000046_02006028_02024639
TU222216 other upstream 309458 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 711105 1161157 ~ 1161690 (+) True G195003
TU221152 other upstream 1412450 458008 ~ 460345 (+) True G194721
TU222725 other downstream 565216 2439917 ~ 2440072 (+) False G196108
TU223597 other downstream 1312294 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 2069127 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 2274722 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 2496310 4371011 ~ 4371430 (+) True G197121

Expression Profile