RNA id: CI01000046_01933932_01935589.mRNA



Basic Information


Item Value
RNA id CI01000046_01933932_01935589.mRNA
length 4523
RNA type mRNA
GC content 0.21
exon number 5
gene id CI01000046_01933932_01935589
representative True

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1932890 ~ 1937822 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGATAAAAGGCAAAGCACAAATATGTTTTGTCATCATAAAGTTAAATCCATTAGCTATAAAGCACCTGGTTGGAAGGCCCACTTTATTAAGTGATTATATCAAAACCCATATGTAAGGCATTCCCAGCAAACACAACTAGGCTACGTTTCTTTTGTGTTTGCTGTGATATTGCTTGAATGCCATGTTGTATTGATAATCTCGTGCCTAACAAAGTAACTCTATTCACATAGTATGGCCTTCGTATATTATTGCAAAATAATTCCATACCGTTTCCAACCACAAGGCGTCACTTGGAGAGAGGGGGCTGGCAGCGTTGGAAGTTGAAGTTACCTTTTTTTCCTGTAATCATTTACATACATTTAAAAAAAAAAAAATCATAAGCTGTTTTATGTTTTTAAACATTTAAAAAACAAACCCATGTCTGCCCGAAACTGTGTTACAAAGATGTAAAAATAAATTATATAATCACTTTATTTTCTGACTGAGTTATTAACAGTCAATTTCGACATTTTGAAACTGAAATGAGACTTGGTACAGGAACGGGAACTTGCGTATTTCTCTGTAATGCAGTCTCATTTGAGCTTCCTTTTTGTGAGCCTTGCATAATAATTTCCTTTGTGTTTGACTACCTCATAAATACCACATTATAACGAAGACTAATCTTGTTTATATCTGATCAGTGTTCTGTTTGTTTTCCGTGGAATTCATTTGGTGTGCTTTCCTGCTTCTACTAAATACTGAGCAAATGGTCTGAATACTTAGGACCATGTGATATTTCAGTTTTTCTTTTTAAATAAATCTGCAAAAATGTCAACAATTCTGTGTTTTTCTGTCAATATGGGGTGCTGTGTGTACATTAATGAGGAAAAAAAATGAACTTAAATGATTTTAGCAAATGGCTGCAATATAACAAAGAGTGAAAAATTTAAGGGGGTCTGAATACTTTCCGTACCCACTGTATAGATGATATGAAATATATTCAAAGATATTCACATATTGATGAATTGTAAAAATAAATAATAATAAAAATTGTCCATACAGATGTCCAAAAAGGTGTCAAAGTTGTCAAATTCAGTGGGATTCTTTGAGATTGTGGGCACAATTCTCCAGCCAAACACCGACTACATTCTGACAGCAAGAATGAGCACAAACTATAACGAACACAAGATACTGAGTGACCAGAGCGCACCAGTTGAGTTCACCAGCCCCTCATCTCCAAATGATATAGTCAGAACGGTGGTTCCACCTCTGTGTGTTGGTTTAGTCCTCATCATTTCTGCTATCTTCATCTGCGTTTTGAGGATGAAGAAAAAATGGTGGGACAAGATCTCCAAGCCAAAAGGTCATATTTTGCCTCCTTCCATTATGAACTTCTCCACAATCCATGTAGAGATTCCAAAACTGGAATTTCAGGAGGAAAAGAAATTGATCTCAGCGTCATCAGTAGATACAACCAACGAGAAAAGTTCCCACAGTGTTGAGTCGGCGGCAGACGATTACAGCCAGGCCGGCTTTGATTCTGGTAGTGACAAGGAGAATTGCAGTTCGATCAACGTCTTATCACACGTCAAACATGCCCTGGATGAGGATTTAAAATCTTTTCTTTTTACCAGCAACACACCCAGCAATCAGGGCACTACGATGGTAGTCAAGAGTGTTGGTATCAGTTCCTCAAGAGAAAACAACCGTGCAAACCGAGATTCGGGCAACTGCACTGGCTCATCGGTTTTTAGCAACATGACATATTTGGAATCGGCCACTTACGATTCTTCATTCCTGGAGCAGCCGAGTTGGGATCATTCCTGTCAGTCCGACAAGAATGAGGTTTTTAGCTGTGAAAACTCAGCTATGAGCGCTGATATCAGCAAGAGCCAGTTTAACTTTCCCACTATTGATTCTTTGGAAGATGGATATCAGTGCTTCAACAGTGTTGTGAACCAGGGAAATGATGCAGATGTTTGTTTGAACCGTTCAGATGATGTTGATTCTGATGAAAATTTCATTGGGAATAATATCATCACTTGTAAAAATCCACCTAATCCTTCTCTGTTGCTCCATGATGGCAGCGTCACACCAAGTGATGATGGATATCAAGCTTTTGAAGGCTTAACAAAGAGCACAGAAGGACAGTGGAGCACGAGCACCAGAACCGAACAAGCTCTTAATGAATGTGGAGCGCTGAAATTCCCCCACAGCACTGGCCAAGATCCCACATCAAAAAGTTTGTGGGCCTCTTCTTTGCATTTCTCACCCATTATTCATATAGACACTTCCTATCAGTCTGTTTAGCTGTGCTGTACACAACTGAAACATTGAATTATCTTTGTATGTAATTTGTTGTTGTTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTTATTATTGTACAGAATTTCACACACAATGCCAAATGTGACCCTGAGTCACATTTGCAAATGCAAATTTTAAAGGCATGATAACAAGGCTAAGACGGTTCTTTTCATTCTGTGCCATTAAAACAAATGATAGGTATTTGCTTATTCATCTGTACAGTTACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU222647 lncRNA upstream 61910 1870698 ~ 1870980 (+) True G196038
TU222644 lncRNA upstream 66083 1866504 ~ 1866807 (+) True G196035
TU222506 lncRNA upstream 188873 1743800 ~ 1744017 (+) True G195909
TU222125 lncRNA upstream 535804 1396763 ~ 1397086 (+) True G195564
TU222096 lncRNA upstream 547920 1384752 ~ 1384970 (+) True G195535
TU222659 lncRNA downstream 23397 1961219 ~ 1961759 (+) True G196050
TU222660 lncRNA downstream 24424 1962246 ~ 1962532 (+) True G196051
TU222580 lncRNA downstream 28910 1966732 ~ 1968371 (+) True CI01000046_01963803_01965901
TU222587 lncRNA downstream 59301 1997123 ~ 1999094 (+) True G195978
TU222569 lncRNA downstream 98060 2035882 ~ 2036110 (+) False G195966
CI01000046_01903950_01922429.mRNA mRNA upstream 10451 1902090 ~ 1922439 (+) True CI01000046_01903950_01922429
CI01000046_01865451_01881353.mRNA mRNA upstream 51521 1865451 ~ 1881369 (+) False CI01000046_01865451_01881353
CI01000046_01540075_01668012.mRNA mRNA upstream 264878 1540075 ~ 1668012 (+) False CI01000046_01540075_01668012
CI01000046_01318513_01343464.mRNA mRNA upstream 588695 1316670 ~ 1344195 (+) True CI01000046_01318513_01343464
CI01000046_01289846_01293954.mRNA mRNA upstream 638554 1289568 ~ 1294336 (+) True CI01000046_01289846_01293954
CI01000046_01963803_01965901.mRNA mRNA downstream 25733 1963555 ~ 1967052 (+) False CI01000046_01963803_01965901
CI01000046_01988070_01995034.mRNA mRNA downstream 48498 1986320 ~ 1995330 (+) True CI01000046_01988070_01995034
CI01000046_02006028_02024639.mRNA mRNA downstream 68206 2006028 ~ 2024940 (+) True CI01000046_02006028_02024639
CI01000046_02027256_02031337.mRNA mRNA downstream 89332 2027154 ~ 2031451 (+) True CI01000046_02027256_02031337
CI01000046_02037519_02037782.mRNA mRNA downstream 99697 2037519 ~ 2039055 (+) False CI01000046_02037519_02037782
TU222565 other upstream 58189 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 369553 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 771200 1161157 ~ 1161690 (+) True G195003
TU221152 other upstream 1472545 458008 ~ 460345 (+) True G194721
TU222725 other downstream 502095 2439917 ~ 2440072 (+) False G196108
TU223597 other downstream 1249173 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 2006006 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 2211601 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 2433189 4371011 ~ 4371430 (+) True G197121

Expression Profile