RNA id: CI01000046_01963803_01965901.mRNA



Basic Information


Item Value
RNA id CI01000046_01963803_01965901.mRNA
length 2464
RNA type mRNA
GC content 0.40
exon number 3
gene id CI01000046_01963803_01965901
representative False

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1963555 ~ 1968371 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATAAATATAAAGACACATTACATTTATTGAAATGCATTAAATTAAATGAAAAAAAAAAAAAAATCAAACAGTTGGAAATTTCGTTTGGGGATTGTTTTACTCATCATTATAGCCTATTAATTGATGTTAAACTCAACATTTCCATTTATCGTGAAATTAGACATGGAAAAGGGTAGGGTTATTTCAGGTTTAGGCTTGGAGGTGAAATTATGTTTCGCTTTGCTTGTTGAGGTTCTAGATGTCAGTATGTCACTCCATGCCCTCCTCTCTGACAAAGATGGGGCCCAATATGACCGCAAACTCGCCTCGCATCGGTGGCCTGTCACTGGCATGATCTGGCGACTTTCTAGTCCTGCATCAGAGAGTCGTCCAACGGCAGTGCTCCGCAAACTATGGTTTGTGTACATTTGGTCATATTTGCCTCCTTCCATTATGAACTTCTCCACAATCCATGTAGAGATTCCAAAACTGGAATTTCAGGAGGAAAAGAAATGGATCTCAGCGTCATCAGTAGATACAACCAACGAGAAAAGTTCCCACAGTGTTGAGTCGGCGGCAGACGATTACGGCCAGGCCGGCTTTGATTCTGGTAGTGACAAGGAGAATTGCAGTTCGATCAACGTCTTATCACACGTCAAACATGCCCTAGATGAGGATTTAAAATCCCTTCTTTTTACCAGCAACACACCCAGCAATCAGGGCACTACGATGGTAGTCAAGAGTGTTGGTATCAGTTCCTCAAGAGAAAACAACCATGCAAACCGAGATTCGGGCAACTGCTCTGGCTCATCGGTTTTGTGTTTGGAATCGGCCACTGATGATTCTTCATTCCTAGAGCAGCTGAGCTGTGATCATTCCTGTCAATCCGACAAGAGGGAAAACTCCTTTATGAGTGAGTTTAACTTTCCCACTATTGATTCTTTGGAAGATGGATATCAGTGCTTCAACAGTGTTGTGAACCAGGGAAATGATGCAGATGTTTGTTTGAACCGTTCAGATGATGTTGATTCTGATGAAAATTTCATTGGGAATAATATCATCACTTGTAAAAATCCACCTAATCCTTCTCTGTTGCTCCATGATGGCAGCGTCACACCAAGTGATGATGGATATCAAGCTTTTGAAGGCTTAACAAAGAGCACAGAAGGACAGTGGAGCACGAGCACCAGAACCGAACAAGCTCTTGATGAATGTGGAGCGCTGAAATTCCCCCACAGCACTGGCCAAGATCCCACATCAAAAAGTTTGTGGGCCTCTTCTTTGCATTTCTCACCCATTATTCATATAGACACTTCCTATCAGTCTGTTTAGCTGTGCTGTACACAACTGAAACATTGAATTATCTTTGTATGTAATTTGTTGTTGTTCTGCATGAATCACCCATGAAACTATGACCAGTAATAACTATCTTTAAACCTTCAATTCAAGTTACACTTTTAACAATAAGAGGTTGTACAGTGTCTTAAATGCCTGAAGAGGACATGTATTACCATTTTGACATTATTCTGTATGATTTTATCGTCTTTGACATTGAGTAACTGTCACGGAGTCACAGCCAGCACCCACCAACACATCGTCACCAGATCTACACGCTCCACCCACTCGTTCACAATCTCTTGAATTCTAATCACCCACACCTGCACCTTATCCGACACACTATAAAGACTCTCACTCTCTGCACTTCAGTGTCTGGTCTCGTCTAACATACCTGGACTCCTTACCTGAGCATTTCGTATCCTCTTCCATCCACCTTCCTTCGTCTACTCTCCATTCCTCGTGGATCCTTCACCTGCAAAGAGACAATGACTGTTCCAAGTGACTGTTCCAAAGTGCCTGTTCATTTACTCACCTGCACTCTCTGTTTGGCAATGTCCGTGCCTCTGTCTCAATAAACCTGTTAATCACTAACCTGTCTGCCTCCGTCTGTCCTGACAGTAACATTTACTAATGTACATTTTAAATGCATTGTTATATTATTATTGCCATCTCAGTCTTTTTCTGTTTTTGCAAATAAATAAATAAATAAAATACATACCAAATGTAGGTGTGGGTGACACTTTAAATATGCCATAAATGCCCCCAGGCTTTTATTATCATCTGCCATTGATGATTACATTTTAACCAGAAACCCTGAGATATCAGCCGCATCAAAACTTCAGAAAATGAAAGAAAGAAAAAAGTGTTGGACATACATACCAAAATAACCAATTTTACCTACATTTTTTCTTCTTCAAAAAGTGAAAGCGAAAGGCTTCATCTTCATTCTTTCTCTCAGGCAGAGATTTAATTGAGAATATGCTAGCATAAGTCTCATTTCATTATAGTGATGTGAGATTCAGTGCTGTAGTAATAATTACTAAATTAAATAACTAAAATATTGACACAAATTATAAAAAAAGACTTACAAATAATATAAATATACTACAACCTAATGGTCAGTGAATATGTCCATGTAAATAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU222660 lncRNA upstream 1023 1962246 ~ 1962532 (+) True G196051
TU222659 lncRNA upstream 1796 1961219 ~ 1961759 (+) True G196050
TU222568 lncRNA upstream 4407 1888077 ~ 1959148 (+) True G195965
TU222647 lncRNA upstream 92575 1870698 ~ 1870980 (+) True G196038
TU222644 lncRNA upstream 96748 1866504 ~ 1866807 (+) True G196035
TU222587 lncRNA downstream 30071 1997123 ~ 1999094 (+) True G195978
TU222569 lncRNA downstream 68830 2035882 ~ 2036110 (+) False G195966
TU222570 lncRNA downstream 68830 2035882 ~ 2036110 (+) False G195966
TU222571 lncRNA downstream 68830 2035882 ~ 2036110 (+) True G195966
TU222590 lncRNA downstream 89018 2056070 ~ 2057016 (+) True G195981
CI01000046_01933932_01935589.mRNA mRNA upstream 25733 1932890 ~ 1937822 (+) True CI01000046_01933932_01935589
CI01000046_01903950_01922429.mRNA mRNA upstream 41116 1902090 ~ 1922439 (+) True CI01000046_01903950_01922429
CI01000046_01865451_01881353.mRNA mRNA upstream 82186 1865451 ~ 1881369 (+) False CI01000046_01865451_01881353
CI01000046_01540075_01668012.mRNA mRNA upstream 295543 1540075 ~ 1668012 (+) False CI01000046_01540075_01668012
CI01000046_01318513_01343464.mRNA mRNA upstream 619360 1316670 ~ 1344195 (+) True CI01000046_01318513_01343464
CI01000046_01988070_01995034.mRNA mRNA downstream 19268 1986320 ~ 1995330 (+) True CI01000046_01988070_01995034
CI01000046_02006028_02024639.mRNA mRNA downstream 38976 2006028 ~ 2024940 (+) True CI01000046_02006028_02024639
CI01000046_02027256_02031337.mRNA mRNA downstream 60102 2027154 ~ 2031451 (+) True CI01000046_02027256_02031337
CI01000046_02037519_02037782.mRNA mRNA downstream 70467 2037519 ~ 2039055 (+) False CI01000046_02037519_02037782
CI01000046_02066859_02072868.mRNA mRNA downstream 99807 2066859 ~ 2073014 (+) True CI01000046_02066859_02072868
TU222567 other upstream 4407 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 88854 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 400218 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 801865 1161157 ~ 1161690 (+) True G195003
TU221152 other upstream 1503210 458008 ~ 460345 (+) True G194721
TU222725 other downstream 472865 2439917 ~ 2440072 (+) False G196108
TU223597 other downstream 1219943 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 1976776 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 2182371 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 2403959 4371011 ~ 4371430 (+) True G197121

Expression Profile