RNA id: CI01000046_02037519_02037782.mRNA



Basic Information


Item Value
RNA id CI01000046_02037519_02037782.mRNA
length 1537
RNA type mRNA
GC content 0.38
exon number 1
gene id CI01000046_02037519_02037782
representative False

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2037421 ~ 2039716 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGTCCATCATGGATCATAGCCCCACCACCGGGGTCGTCACCATTATTGTAATACTCATTGCCGTTGCCGCACTGGGGGCTTTAATTCTTGGTTGTTGGTGCTATTTGCGGCTGCAGCGCATCAGTCAGTCTGAAGATGAGGAAAGCATCGTCGGAGAAGGTGAAACCAAGGAGCCCTTCCTGCTGGTCCAGTATTCGGCCAGAGGCCCACGGGTGGAGCACAAGACCAAGCTCACTCCTAACGGCAACGAGAGCCACACCTAATTCTGCCTTCGCAATGCATACAATGTAGTGGGGCGTCCGTCAGATATCTCCCTTACAATATCACTCAACACTGAAATGAATCCACTCTGCATTTTAAACAAGGTGATAAATGAAGGCGAACCTAGTGCATGCAGTTGTCTAGTTGCTTTGACTGTTGATTTTTTTTCGGCCATTTTGTGGTGGTAGAGCCCTGTTATAATGTGAAATCGATGACTGTAAGCGTTTTGTGCAATGCTGTTTGTTTGTAAAGTTGTAGCTGAGTTCTGAAGCTAAATCAAGACTCATTCTGTTTATTTGGTTGTATTTTTACTTTACTGTTTCATCCAGAGCTGGCTCTGGTATTAAGAAATTCAGCACACATTTCAATGGACTGATGTCAAAGCTTTTGAGGCTTTTTATCCAATTCATTCCTTTTTTTTTCAGGAAGATATTTCAGAATTCCCATAGAAATGCTTTATTGAATTGCAATACAAAAAGGAACATTTTCATTACAAAGAAGCACTTCAGGATACCATAACTTGCCAAATTATGTAAACTAGCTTTTATAAGCTCTTACATTATGTTCATGGGATCATGATTTCATTAGCACTTTTTATCTTTCATGTGGTGTACAAGTGATTTTATATCAGCTGGTTCCGGTCTAAAACTGCTAGGAAACCACTAAAAACAACGAAAGCCAATGAGTGAGGTCTTTTTTATTCTTGTTGAATACTGTTGTGGCCTCTGAGGCGTTCGTTTTTTTGTGGTTGAGCACATTTCTACATAGCGAGAGGTCATTTGAAAGTGTAAATATCATTTTTATAGATGGCTGGATGCACAGCTGGATACTGAAAAGTCATTGTCTTAAGTTTTTAACCTGTTTCTTCACAGTATTATTTAATTCCACATATTTTTGTGATAACGTGATGTTTGCTGTTTGTACATGCGAGATGAAAGAGAGAAATGATTTATTTTTATACAATATTCATGCAAATGTCAGTCAGGCATTTAGAGAGAAAGATGAAGCCTGAAAAAGCAGCTAATATGATTTAATTGATGTTACTAATTACAAATCTTTAGGGTTCTGTCACACATTTGAAGTCGACAGATTTTTTTCTGAATTATGTGCTGTTCAATATACAGGAAAAGAAAAACAAGGAGGACAGTACATGCATGTTCATTTAATCTGCATATTTGAGGAAAAAAAAGCTACTTTTTAATCAGTTAAGCGCTCAGTATATTGCTTATGTCACTCCAGCCAGTGTGTCTGTCCAGTGTTTGACTGTACTGAACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU222587 lncRNA upstream 38425 1997123 ~ 1999094 (+) True G195978
TU222580 lncRNA upstream 69148 1966732 ~ 1968371 (+) True CI01000046_01963803_01965901
TU222660 lncRNA upstream 74987 1962246 ~ 1962532 (+) True G196051
TU222659 lncRNA upstream 75760 1961219 ~ 1961759 (+) True G196050
TU222568 lncRNA upstream 78371 1888077 ~ 1959148 (+) True G195965
TU222590 lncRNA downstream 17015 2056070 ~ 2057016 (+) True G195981
TU222691 lncRNA downstream 39067 2078122 ~ 2078480 (+) True G196076
TU222695 lncRNA downstream 43630 2082685 ~ 2083646 (+) True G196080
TU222700 lncRNA downstream 47754 2086809 ~ 2087131 (+) True G196085
TU222701 lncRNA downstream 48224 2087279 ~ 2087514 (+) True G196086
CI01000046_02027256_02031337.mRNA mRNA upstream 6068 2027154 ~ 2031451 (+) True CI01000046_02027256_02031337
CI01000046_02006028_02024639.mRNA mRNA upstream 12579 2006028 ~ 2024940 (+) True CI01000046_02006028_02024639
CI01000046_01988070_01995034.mRNA mRNA upstream 42189 1986320 ~ 1995330 (+) True CI01000046_01988070_01995034
CI01000046_01963803_01965901.mRNA mRNA upstream 70467 1963555 ~ 1967052 (+) False CI01000046_01963803_01965901
CI01000046_01933932_01935589.mRNA mRNA upstream 99697 1932890 ~ 1937822 (+) True CI01000046_01933932_01935589
CI01000046_02066859_02072868.mRNA mRNA downstream 27804 2066859 ~ 2073014 (+) True CI01000046_02066859_02072868
CI01000046_02123765_02158243.mRNA mRNA downstream 84710 2123765 ~ 2158243 (+) True CI01000046_02123765_02158243
CI01000046_02264732_02268319.mRNA mRNA downstream 225517 2264572 ~ 2268638 (+) True CI01000046_02264732_02268319
CI01000046_02335530_02348525.mRNA mRNA downstream 294919 2333974 ~ 2348945 (+) True CI01000046_02335530_02348525
CI01000046_02356713_02359204.mRNA mRNA downstream 317599 2356654 ~ 2360009 (+) True CI01000046_02356713_02359204
TU222567 other upstream 78371 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 162818 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 474182 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 875829 1161157 ~ 1161690 (+) True G195003
TU221152 other upstream 1577174 458008 ~ 460345 (+) True G194721
TU222725 other downstream 400862 2439917 ~ 2440072 (+) False G196108
TU223597 other downstream 1147940 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 1904773 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 2110368 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 2331956 4371011 ~ 4371430 (+) True G197121

Expression Profile