RNA id: CI01000046_02356713_02359204.mRNA



Basic Information


Item Value
RNA id CI01000046_02356713_02359204.mRNA
length 1245
RNA type mRNA
GC content 0.39
exon number 4
gene id CI01000046_02356713_02359204
representative True

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2356654 ~ 2360009 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATAAAGAGGTTAAGCTCTTTTGTAATTAGCACACACTCTAATACATACCACGATTTAATGGCCTTAGTGAACAAGACAGGCTGCTTGGCCTCTTCAGCAAGGCTTTGTACCAAAAAGACCTGCTTGTTATTGACAGCTGCTGCACGTTTGCTTGAAACAATTATGGCGCGTATCGGTGAAAGTGATCCCACACAATCAATTAGCCAACGTACTTCGCCTAAAATCCAGAAAATGAAGGAGTGGGTTGTCAATGCCAGAAAAACAGCACCCGGCTCCGCCGCCACTGGCTGGCGAAGAGTAATTCACCAAAATTGCCACTTAGAGCCGCTCCAAGATGTGCGTTTCATCTCCAAGCTTCCTCTGGTCTCTGCTAGTCAGTTCATTTTTACTTCCTCCAAGAGTGCTAGCACTTCATTAACCTTGCCAGGCTCAAGATAAGAGAGGTAGAGCATCAAACGAAGCCAGCCAACAGAGAGAAAAGACAGCGCAGTCTCCACCGCACAGCGGCCATCAAACAGACATAAGCACGGCCACACACACAGTGTCCCATGCAAAAAACACTCAATGAGCTCTCTTTAGCATATCAGGGCTGCTTCTGAGTCTGTCATTATAAGCACCAGAAGGGAGTTAACCCCAGAATCCATAAAGTGGTTGTGATTAAGGCATGATATTAAAGAATTCAAATTTTTGTTTTATTGATAAAATATGTATACAACTTTTATGTAATCCTTGGCATTGACAATCCAAAAGAGGAAACGAACAAACAAAAAACAAAGCAAAAAAAAAAAAAAAAAAAAACACAGGCAAAAGTCAATGTTACAGGTTCTGAAACATTAAAAATGGAGGCCTATGTAAAACCACTAGTATTTGACAAACTATCAATTTTATGCAGGACTCTTAATTATTAATTTTTCAGGATTCAAAAGACCTTTTGATCTGAAAGCTAAATGCTTAATTAGTTTTGAAGACAAATATAATTGTCTGTGAACTGGAGAAATACAGAAAGAAAAGCAGCTACCAGGTGCCCAGTATGTGTGGAAACCCATATGCTGGAAAAGTCACCATGAAGTTCAGGGAATGACTTCAGTGGGCCCACAGGTTTACATTAAATATGCGTCAAGTTTATAATAATTAAGAGGAATAACTCAAGACCACACAAAACTGAGTCAAATGTGAGTTCATGATCAACATCTGTGGGGAAAAAAAAAAAAAAAAAAAAACATATACAATTTAAGTTTGAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU222806 lncRNA upstream 54576 2301855 ~ 2302078 (+) True G196177
TU222805 lncRNA upstream 54858 2301426 ~ 2301796 (+) True G196176
TU222793 lncRNA upstream 72888 2283538 ~ 2283766 (+) True G196164
TU222785 lncRNA upstream 92592 2263831 ~ 2264062 (+) True G196156
TU222784 lncRNA upstream 93279 2263141 ~ 2263375 (+) True G196155
TU222838 lncRNA downstream 25741 2385750 ~ 2386244 (+) True G196209
TU222724 lncRNA downstream 77841 2437850 ~ 2481044 (+) True G196107
TU222728 lncRNA downstream 79908 2439917 ~ 2445456 (+) True G196108
TU222729 lncRNA downstream 79908 2439917 ~ 2440072 (+) True G196108
TU222746 lncRNA downstream 277989 2637998 ~ 2689802 (+) True G196122
CI01000046_02335530_02348525.mRNA mRNA upstream 7709 2333974 ~ 2348945 (+) True CI01000046_02335530_02348525
CI01000046_02264732_02268319.mRNA mRNA upstream 88016 2264572 ~ 2268638 (+) True CI01000046_02264732_02268319
CI01000046_02123765_02158243.mRNA mRNA upstream 198411 2123765 ~ 2158243 (+) True CI01000046_02123765_02158243
CI01000046_02066859_02072868.mRNA mRNA upstream 283640 2066859 ~ 2073014 (+) True CI01000046_02066859_02072868
CI01000046_02037519_02037782.mRNA mRNA upstream 317599 2037519 ~ 2039055 (+) False CI01000046_02037519_02037782
CI01000046_02365658_02365816.mRNA mRNA downstream 5649 2365658 ~ 2366186 (+) True CI01000046_02365658_02365816
CI01000046_02451052_02454565.mRNA mRNA downstream 91043 2451052 ~ 2454671 (+) False CI01000046_02451052_02454565
CI01000046_02616123_02661535.mRNA mRNA downstream 256038 2616047 ~ 2661964 (+) True CI01000046_02616123_02661535
CI01000046_02674254_02676647.mRNA mRNA downstream 314051 2674060 ~ 2676801 (+) True CI01000046_02674254_02676647
CI01000046_02794245_02796188.mRNA mRNA downstream 433870 2793879 ~ 2797088 (+) True CI01000046_02794245_02796188
TU222567 other upstream 397506 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 481953 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 793317 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 1194964 1161157 ~ 1161690 (+) True G195003
TU221152 other upstream 1896309 458008 ~ 460345 (+) True G194721
TU222725 other downstream 79908 2439917 ~ 2440072 (+) False G196108
TU223597 other downstream 826986 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 1583819 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 1789414 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 2011002 4371011 ~ 4371430 (+) True G197121

Expression Profile