RNA id: CI01000046_02616123_02661535.mRNA


Basic Information

Item Value
RNA id CI01000046_02616123_02661535.mRNA
length 1417
RNA type mRNA
GC content 0.46
exon number 8
gene id CI01000046_02616123_02661535
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2616047 ~ 2661964 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAAATGGGCAGGAATTAAAGCATGAAAGAGCTGAGAGATAGTGCTCTCAGACCCGTAACCTTAGAGATGGAGCATGGGAGAGAGCTGCCTGGTGCGCTTACAGGGCAACAGCATGTACGCCACACATTACGGAAGAAAACACCCTCATAAATTGCGTTTGATTGACAAGATGAACTGCCGTGTTAATCGTAAATTCATCAATGGCACGACAAAGTCTTTTGTTGATGGCGATTTTCTGCAATTCATCAAAATGGCAGACATAGATCAAATGCCATCTGTATTCTTTATGGACTGTAATGAATCAATTAGCATTGTGGATTTTCGAAAACCTGATCAGCAGCGTGGAGGTTGGCTTAAACCATATGTCAAAGGAGCCACACTCAAACGCAGGCTCTTGCATCACTGCGGCAAATCGAAAGTGGACCATGGCGGGGCTATTTTTGCCCACATACCCATGTGTAGCCTCCTTCACTTGTCAGCAGCTGAGCAGAGACTATCAATCAGAGCTGAGCGGCAGACCATATGGGGTCTGATCTCCTGTGGGCACCGGCCCATCCATGGCTCTCCTTGTCATGCTTATATCACATATAGGTCAGGGTCTTCTCACAACTGCAAACAGAGGGACAGGCCAGCTACTGATGGTGGATCTCAGACATGCATGCGATCACTAGACAGTTTAACCGGGGGAACAACAGAAAAAGCCATCACTGCTCTGCATGCTCGCCAATGCGAAATGTCACCCAGACCAGGGAGCAGCTGTGCGCTCCCAGAGGAGGCTCCGTCTGGCTTGAAGACCCTGACTGTTCTGGCCTACAGCACACATGGCCTCCGCTGGACCATGGAGACTCAGGCTATTAATGAGGAATGGACAGAGGAGAAAGCAGAGCTAAGAAGGGTCCCTACAGACACTATTTCCATTTGTTTATGTAGCTCATTTAAGTGTGGAATACAGGCTTCCTCAACAACACATGCCCCATGTTGTTAATGGAATCATTTATATTAATATTTGCAAGAGATTCAGTATGTTTTTAAGGAGCTTGGGGCCAAATGCAAGCAAAATCATGAGTAACAAAATTTGAATATAAATGATGGCTTATGCAGATCATCTGTGTCCATTGCAAACATACTTCAGTGTTTACTCTAACAAGTTCGGCGGCTCATCTGTAATGTATGCCGACACTTTGCGGTAAAATCAGTCTAACTGGAGTGAGTCAGGCTGGACAAACAGCATGTCTATGTTATATTAATGAGCCAAGTCTCTATTGGTTTACTCAGAACTTACCTAGAGGACTAAAGGCCTCCGTATCCTGCTGGCTGTGGTTATGCACGCTCTTGGCCTTTGCCATTTTGTTGCTTTAAAGGTCATGGACTTGGGAGAATGGACTGCAGAATGGAGTCTGTTTTCTTATGCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222724 lncRNA upstream 135003 2437850 ~ 2481044 (+) True G196107
TU222728 lncRNA upstream 158767 2439917 ~ 2445456 (+) True G196108
TU222729 lncRNA upstream 158767 2439917 ~ 2440072 (+) True G196108
TU222838 lncRNA upstream 229803 2385750 ~ 2386244 (+) True G196209
TU222806 lncRNA upstream 313969 2301855 ~ 2302078 (+) True G196177
TU223339 lncRNA downstream 102904 2764868 ~ 2765242 (+) True G196687
TU223343 lncRNA downstream 113407 2775371 ~ 2775660 (+) False G196691
TU223345 lncRNA downstream 113421 2775385 ~ 2775660 (+) True G196691
TU223362 lncRNA downstream 129997 2791961 ~ 2792212 (+) True G196703
TU223357 lncRNA downstream 132406 2794370 ~ 2873461 (+) True G196698
CI01000046_02451052_02454565.mRNA mRNA upstream 161376 2451052 ~ 2454671 (+) False CI01000046_02451052_02454565
CI01000046_02365658_02365816.mRNA mRNA upstream 249861 2365658 ~ 2366186 (+) True CI01000046_02365658_02365816
CI01000046_02356713_02359204.mRNA mRNA upstream 256038 2356654 ~ 2360009 (+) True CI01000046_02356713_02359204
CI01000046_02335530_02348525.mRNA mRNA upstream 267102 2333974 ~ 2348945 (+) True CI01000046_02335530_02348525
CI01000046_02264732_02268319.mRNA mRNA upstream 347409 2264572 ~ 2268638 (+) True CI01000046_02264732_02268319
CI01000046_02674254_02676647.mRNA mRNA downstream 12096 2674060 ~ 2676801 (+) True CI01000046_02674254_02676647
CI01000046_02794245_02796188.mRNA mRNA downstream 131915 2793879 ~ 2797088 (+) True CI01000046_02794245_02796188
CI01000046_02868880_02871348.mRNA mRNA downstream 206916 2868880 ~ 2871611 (+) True CI01000046_02868880_02871348
CI01000046_02911888_02930362.mRNA mRNA downstream 249181 2911145 ~ 2930993 (+) True CI01000046_02911888_02930362
CI01000046_02933552_02949246.mRNA mRNA downstream 271523 2933487 ~ 2949318 (+) True CI01000046_02933552_02949246
TU222725 other upstream 158767 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 656899 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 741346 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 1052710 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 1454357 1161157 ~ 1161690 (+) True G195003
TU223597 other downstream 525031 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 1281864 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 1487459 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 1709047 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 1753566 4415530 ~ 4421687 (+) True G196869

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00052483 False 812 lncRNA 0.49 5 NC_007114.7 42548944 ~ 42746784 (-)