RNA id: CI01000046_02794245_02796188.mRNA



Basic Information


Item Value
RNA id CI01000046_02794245_02796188.mRNA
length 1791
RNA type mRNA
GC content 0.46
exon number 2
gene id CI01000046_02794245_02796188
representative True

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2793879 ~ 2797088 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCATAAAAAAAAGCATACTTCACAGATTCCAGGTCCTTCTTATAAAACATTACATAAACTTAACTGATTTTATTTTCTTCTTTTGAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAAAAAAGAAAAAGAAAAAACCTGTTCCTGGAGTTCTACCTACCCGCAGAGTTCAGATACAACCCTGATCCAGCATACATGTCATGTAATTCTCAAGTGCTCCCATGGATCTTAGTTAGCTGGTTCAATTTTGTTTGATCACGGTTGGAGCTGAACTTTGCAGGAAGGTATATTAGGTAAAGTATATCAGGACTCAGTAGTCTGCTGGATCCTCCACATTCTACAAAAAATCGGCCTACAAAGTGAGGAATTATGTCTTGCGTATTGCAAGCAGCAGTTTGCACAGCATGTGCAAATAAACGACACTATCAGCAGTTCTGGCTGAAGCCGCAGGTCTCGCCCCAAGCCTGGCAACATGATCGCTGCTCGCTCAAGGTGAACAAGAGGAAGGTCGTCTTCACAGATGCCTCCAAAATGGGTTGGGGAGCTCTGTGCGACAGCCATCCGGCCTTCGGCACTTGGAACGGCAAGGAAAGCGAGCTTCATATCAACCGTCTGGAAATGATGGTGGTATATCAAGCTCTCCAAACTTTCCTTCCTCTCCTGGTGGGGCACCATGTCTTAGTCAGATCAGACAGCATGACAGTGGGGTCCTTCATAAATCACCAGGGCGGGCTCTCTTCAAAGCCCCTCTTCACTCTAGCGAAAACCATCCTAGAGTGGGCCCAACACAATCTGCTCTCACTGAGAGCAGCGCATATACAGGGCGTACTGAACATAGGGGTGGACATGTTGTCCCGGAACAACCTTCCCTCGAAAGAATGGTCGCTCCATTGATTTCTCAATGGGAGCCTGCAAACCTCCCTGGGAATGTAGTAAACACTATCTCACAAGCTAGAGCTCCGTCAACAAGACGTCTCTACTCCCTTAAATGGTCCGTCTTTGCTGCCTGGTGCACAACCCGGGGCGAGGATCCATTTACTTGTGACATATCACAGATATTGTCCTTCCTTCAAGACTTAATGGATAGAGGCCGTACTCCCTCTACCCTTAAGGTCTATGTCGCAGCTATAGCGGCCTCTCATGCTCCTATAGCAGGGCAGTCGAAAGGGAGAAACAACCTTGTTGTTTGCTTCCTACCTGGGACCTATCCTTGGTTCTTAGAGGCCTTAAAGGCCCTCCCTTTGAACCAATCCAGACTGCCGACTTACGTCCCTTGTCACTAAAAACAGCCTTACTGCTAGCTTTAGCATCGGTTAAGCATGTGGGAGATTTGCAGGCGCTCGCTGTGAGCCCCTCTTGTCTTGAATTCGGGCCTAACGACTCCAAAGTCGTCCTGAAACCAAGATATGGATACGTCCCGAAGGTCCTATCCACCCCCTTTAGGGCGCAGATGGTCATTCTCTCCGTTCTTCCTCCTTCTCAGGATGATCAGGAGTTGAACCTCCTCTATCCTGTTGTATATCGACATGAAATATTAATTCAAAATCACCTACGTGCACAATAGCTTCATATTTATACCTGTAAATGATTTGACTCGCTACCACGGCGCATGATGAAGGGAATGTCTGCCAGTTCCACCAAGTGGTTAAAACGAATGATTTGTATTCATTACAATGACTTTGTTTTAACATTTAAAAACAGATATGTTCAAATTCCAAAGCTTGATAGTTCCTGTTGGTAAGACTGACTTACTACAGGTGACATTTTGTCAATACCTCCCTTCATGTACTTACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU223362 lncRNA upstream 1667 2791961 ~ 2792212 (+) True G196703
TU223343 lncRNA upstream 18219 2775371 ~ 2775660 (+) False G196691
TU223345 lncRNA upstream 18219 2775385 ~ 2775660 (+) True G196691
TU223339 lncRNA upstream 28637 2764868 ~ 2765242 (+) True G196687
TU222747 lncRNA upstream 43913 2649288 ~ 2749966 (+) True G196123
TU223403 lncRNA downstream 144060 2941148 ~ 2941489 (+) True G196744
TU223408 lncRNA downstream 169100 2966188 ~ 2966536 (+) True G196749
TU223413 lncRNA downstream 184490 2981578 ~ 2981812 (+) True G196754
TU223416 lncRNA downstream 193076 2990164 ~ 2990436 (+) True G196757
TU223432 lncRNA downstream 219377 3016465 ~ 3016713 (+) True G196773
CI01000046_02674254_02676647.mRNA mRNA upstream 117078 2674060 ~ 2676801 (+) True CI01000046_02674254_02676647
CI01000046_02616123_02661535.mRNA mRNA upstream 131915 2616047 ~ 2661964 (+) True CI01000046_02616123_02661535
CI01000046_02451052_02454565.mRNA mRNA upstream 339208 2451052 ~ 2454671 (+) False CI01000046_02451052_02454565
CI01000046_02365658_02365816.mRNA mRNA upstream 427693 2365658 ~ 2366186 (+) True CI01000046_02365658_02365816
CI01000046_02356713_02359204.mRNA mRNA upstream 433870 2356654 ~ 2360009 (+) True CI01000046_02356713_02359204
CI01000046_02868880_02871348.mRNA mRNA downstream 71792 2868880 ~ 2871611 (+) True CI01000046_02868880_02871348
CI01000046_02911888_02930362.mRNA mRNA downstream 114057 2911145 ~ 2930993 (+) True CI01000046_02911888_02930362
CI01000046_02933552_02949246.mRNA mRNA downstream 136399 2933487 ~ 2949318 (+) True CI01000046_02933552_02949246
CI01000046_02981176_03006650.mRNA mRNA downstream 183739 2980827 ~ 3006675 (+) True CI01000046_02981176_03006650
CI01000046_03041320_03042564.mRNA mRNA downstream 244232 3041320 ~ 3042750 (+) True CI01000046_03041320_03042564
TU222725 other upstream 336599 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 834731 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 919178 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 1230542 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 1632189 1161157 ~ 1161690 (+) True G195003
TU223597 other downstream 389907 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 1146740 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 1352335 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 1573923 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 1618442 4415530 ~ 4421687 (+) True G196869

Expression Profile