RNA id: CI01000046_03138487_03139142.mRNA



Basic Information


Item Value
RNA id CI01000046_03138487_03139142.mRNA
length 804
RNA type mRNA
GC content 0.40
exon number 2
gene id CI01000046_03138487_03139142
representative False

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3138487 ~ 3140879 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGATGCAGGGACCACTGCATTCAACAGATTGGCAAACCATCTGCCACAGCAAATTGACACTCTCGAGACGTACGCAACACTTCCTGTAGCGATCTGCTGTGTAAAGAAAGGCACAAACAAAAACCGCTGGAAGCGACAGATCCGAGAGCCTCTTCAATGGTGTTTACAATCACAGTGGAAAGTTGGTTTACCGTCAGAGTTGTTGTCTGCCAGTGACGCTACTCTGAGAGGAACCACCACCAACACCACATAAAGCAACAAGATGTCTGCTTGTCAGGGCCCAACTGAAATTTCCACTGCGCTGCTCGTGACACACTCTCTCCAGGATTTCTCCTCTTTTCAAGCCCTTTAACTGTTTTTCAGTTCTCATTTCAACAGCAAAAACGTGTCAGTTTCTTTCTGAAGCACATGTGCGTGAAGTTTTAACCCAGAAAACAGAAATGCTGCTTCTCAAATCCTTTTATTACATAAAACACACAATGTGTAATGTTGTTTCAGCTGCGAAGTACATTCCTGTGTCTGTTTACAAAATAATATGTACAAAAATAGTTAAAATCACGGCTTGGAAGTGGGTTATTACACACAAAAAAAGTTTCTTAATATCTTAATAAGTGACAAATTTGTGTCATTTTTCCAAAATTGATACCCCTCAACACATGTACACCCCTGGATAAGATGCCATTACATATACAAACATTAGCTAAAAAACATCCTGACTTCTAGATAATAGAGTTGCGGTTTGATTTTTATTAAACAGGTGCTAAGGCTTGTGCAGTAAATTTCCCCTTCATCATTCTCAACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU223443 lncRNA upstream 54367 3082933 ~ 3084120 (+) True G196784
TU223469 lncRNA upstream 95005 3043191 ~ 3043482 (+) True G196809
TU223439 lncRNA upstream 115094 3023159 ~ 3023393 (+) True G196780
TU223432 lncRNA upstream 121774 3016465 ~ 3016713 (+) True G196773
TU223416 lncRNA upstream 148051 2990164 ~ 2990436 (+) True G196757
TU223552 lncRNA downstream 74061 3213752 ~ 3220825 (+) True G196891
TU223637 lncRNA downstream 422806 3562497 ~ 3563548 (+) True G196975
TU223546 lncRNA downstream 483021 3622712 ~ 3642563 (+) True G196885
TU223518 lncRNA downstream 499218 3638909 ~ 3641270 (+) True G196857
TU223507 lncRNA downstream 504492 3644183 ~ 3644698 (+) True G196846
CI01000046_03046400_03047689.mRNA mRNA upstream 90055 3045779 ~ 3048432 (+) True CI01000046_03046400_03047689
CI01000046_03041320_03042564.mRNA mRNA upstream 95737 3041320 ~ 3042750 (+) True CI01000046_03041320_03042564
CI01000046_02981176_03006650.mRNA mRNA upstream 131812 2980827 ~ 3006675 (+) True CI01000046_02981176_03006650
CI01000046_02933552_02949246.mRNA mRNA upstream 189169 2933487 ~ 2949318 (+) True CI01000046_02933552_02949246
CI01000046_02911888_02930362.mRNA mRNA upstream 207494 2911145 ~ 2930993 (+) True CI01000046_02911888_02930362
CI01000046_03205894_03253907.mRNA mRNA downstream 65901 3205592 ~ 3254330 (+) False CI01000046_03205894_03253907
CI01000046_03347042_03438271.mRNA mRNA downstream 207351 3347042 ~ 3438271 (+) True CI01000046_03347042_03438271
CI01000046_03443490_03508344.mRNA mRNA downstream 303586 3443277 ~ 3508481 (+) True CI01000046_03443490_03508344
CI01000046_03511698_03542614.mRNA mRNA downstream 371714 3511405 ~ 3542844 (+) True CI01000046_03511698_03542614
CI01000046_03544999_03551574.mRNA mRNA downstream 405308 3544999 ~ 3551897 (+) True CI01000046_03544999_03551574
TU222725 other upstream 681207 2439917 ~ 2440072 (+) False G196108
TU222567 other upstream 1179339 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 1263786 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 1575150 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 1976797 1161157 ~ 1161690 (+) True G195003
TU223597 other downstream 47304 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 804137 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 1009732 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 1231320 4371011 ~ 4371430 (+) True G197121
TU223530 other downstream 1275839 4415530 ~ 4421687 (+) True G196869

Expression Profile