RNA id: CI01000046_06617493_06617792.mRNA


Basic Information

Item Value
RNA id CI01000046_06617493_06617792.mRNA
length 1039
RNA type mRNA
GC content 0.46
exon number 1
gene id CI01000046_06617493_06617792
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 6617493 ~ 6618531 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGCGCGCGCTAAACACGACAAAAACCAATGCGCTCCAACAGAGAGGCATCGAGGCGGTGCGCGTGTCAGTGGGTGACTGCAGCAGTGGCGGCCTTTGTCCTCCACCTGTCAAAGCTACACCGGACAGTGACATCATTTGCAAAAGCACTTGGGTTTACCGTCAGGGCTCTCGCACGCAGGAAGTCGTGGACGCGTCCTCAGCCATTCCTCTGGGTTTTGGCAAGTGCGGAACACTTGCTTTATTAAGTTCAAAGGCTGTTTTAAGACTCGGCATGCTAGAACTAGGCAGCAAATACTAGAGGTCATTTCAGCATTCTCAAATAGCGCTGAAATTCACTCAAAATCAGTCAAAATCTTGTGCTTGGAACATTTTGAGGTTAAGTGAAGGTCGGATACTAAAACGACAACAAAAGCTCCGCAATGCCCGGTTTGCTGGCATCGAGGGGCAGTGAATGGCACTAGAAGACACAGGACACTGTCAGTGGAGCGTGAAGACGTAATACTTGCTTTTCACACGAGCCTCCCGGGACTTCAGCCAGGGGCGTAGGCAGAATTCGACACCAGACAAAGAGTCCTCTACTGCTGCCATCTGAATGCATAGACGACAAATACAGGCATCATTCAGCGCAAAAGCTGAGATGAAGCAGCTAAAAGAGCAACCTTGAATGGAGCGAACTGCGGGCAGGGAGTCAGTATCTCTGGATTTGTGGCAAAAAACAGCTATACATTTCAGTGTAGGTTACATATCTGTTAGAAAAGAGTGAGGAGGGTGAGGTGCTGACTATTTACATAAGATACTAAAACAGTAGTATTCAGGGCGGACATGGCACTATACAAAGTAGCTATACACAACCATTGAGGGAACGAGGTTCACATAGTAAGATCTATCCCTTTTGAGGAAAGTTGTTCGAATTATTGGTACCTTAAACATGTGGCACTTGAGAATACAGACACTTTTGTTAGCGGGTTCTGACCAAAAAGCCAGTATAGTTTGGTTGTTGTGGACAAAACGGAAAAAAGAGATTTAAAACAAAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224544 lncRNA upstream 41696 6575529 ~ 6575797 (+) True G197827
TU224543 lncRNA upstream 42720 6574564 ~ 6574773 (+) True G197826
TU224541 lncRNA upstream 45943 6571335 ~ 6571550 (+) True G197824
TU224539 lncRNA upstream 47626 6569600 ~ 6569867 (+) True G197822
TU224437 lncRNA upstream 134495 6482106 ~ 6482998 (+) True G197721
TU224472 lncRNA downstream 55129 6673660 ~ 6675496 (+) True G197755
TU224592 lncRNA downstream 167387 6785918 ~ 6786281 (+) True G197875
TU224598 lncRNA downstream 206467 6824998 ~ 6825219 (+) True G197881
TU224602 lncRNA downstream 222304 6840835 ~ 6841264 (+) True G197885
TU224605 lncRNA downstream 244719 6863250 ~ 6881231 (+) True G197888
CI01000046_06605188_06611590.mRNA mRNA upstream 5779 6605188 ~ 6611714 (+) True CI01000046_06605188_06611590
CI01000046_06586111_06594100.mRNA mRNA upstream 23311 6586111 ~ 6594182 (+) True CI01000046_06586111_06594100
CI01000046_06553680_06556870.mRNA mRNA upstream 59768 6552326 ~ 6557725 (+) True CI01000046_06553680_06556870
CI01000046_06489840_06506540.mRNA mRNA upstream 109886 6489620 ~ 6507607 (+) True CI01000046_06489840_06506540
CI01000046_06465424_06470835.mRNA mRNA upstream 146499 6465424 ~ 6470994 (+) True CI01000046_06465424_06470835
CI01000046_06653842_06661599.mRNA mRNA downstream 35311 6653842 ~ 6661648 (+) True CI01000046_06653842_06661599
CI01000046_06754054_06769901.mRNA mRNA downstream 135523 6754054 ~ 6770272 (+) True CI01000046_06754054_06769901
CI01000046_06794525_06807060.mRNA mRNA downstream 175994 6794525 ~ 6807152 (+) True CI01000046_06794525_06807060
CI01000046_06808895_06820945.mRNA mRNA downstream 189976 6808507 ~ 6821543 (+) False CI01000046_06808895_06820945
CI01000046_06827772_06830465.mRNA mRNA downstream 207989 6826520 ~ 6830465 (+) True CI01000046_06827772_06830465
TU224234 other upstream 874809 5726121 ~ 5742684 (+) True G197528
TU224052 other upstream 1341040 5274382 ~ 5276453 (+) True G197352
TU223530 other upstream 2195806 4415530 ~ 4421687 (+) True G196869
TU223789 other upstream 2246063 4371011 ~ 4371430 (+) True G197121
TU223720 other upstream 2467713 4149423 ~ 4149780 (+) True G197055
TU224505 other downstream 201407 6819938 ~ 6820389 (+) True G197788

Expression Profile