Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU224505 |
| length | 452 |
| RNA type | TUCP |
| GC content | 0.40 |
| exon number | 1 |
| gene id | G197788 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 6819938 ~ 6820389 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU224592 | lncRNA | upstream | 33657 | 6785918 ~ 6786281 (+) | True | G197875 |
| TU224472 | lncRNA | upstream | 144442 | 6673660 ~ 6675496 (+) | True | G197755 |
| TU224544 | lncRNA | upstream | 244141 | 6575529 ~ 6575797 (+) | True | G197827 |
| TU224543 | lncRNA | upstream | 245165 | 6574564 ~ 6574773 (+) | True | G197826 |
| TU224541 | lncRNA | upstream | 248388 | 6571335 ~ 6571550 (+) | True | G197824 |
| TU224598 | lncRNA | downstream | 3677 | 6824998 ~ 6825219 (+) | True | G197881 |
| TU224602 | lncRNA | downstream | 19514 | 6840835 ~ 6841264 (+) | True | G197885 |
| TU224605 | lncRNA | downstream | 41929 | 6863250 ~ 6881231 (+) | True | G197888 |
| TU224498 | lncRNA | downstream | 70828 | 6892149 ~ 6898018 (+) | True | G197781 |
| TU224504 | lncRNA | downstream | 77966 | 6899287 ~ 6900498 (+) | True | G197787 |
| CI01000046_06794525_06807060.mRNA | mRNA | upstream | 12786 | 6794525 ~ 6807152 (+) | True | CI01000046_06794525_06807060 |
| CI01000046_06754054_06769901.mRNA | mRNA | upstream | 49666 | 6754054 ~ 6770272 (+) | True | CI01000046_06754054_06769901 |
| CI01000046_06653842_06661599.mRNA | mRNA | upstream | 158290 | 6653842 ~ 6661648 (+) | True | CI01000046_06653842_06661599 |
| CI01000046_06617493_06617792.mRNA | mRNA | upstream | 201407 | 6617493 ~ 6618531 (+) | True | CI01000046_06617493_06617792 |
| CI01000046_06605188_06611590.mRNA | mRNA | upstream | 208224 | 6605188 ~ 6611714 (+) | True | CI01000046_06605188_06611590 |
| CI01000046_06827772_06830465.mRNA | mRNA | downstream | 5199 | 6826520 ~ 6830465 (+) | True | CI01000046_06827772_06830465 |
| CI01000046_06850660_06870302.mRNA | mRNA | downstream | 29339 | 6850660 ~ 6870338 (+) | True | CI01000046_06850660_06870302 |
| CI01000046_06920689_06937254.mRNA | mRNA | downstream | 99368 | 6920689 ~ 6938171 (+) | False | CI01000046_06920689_06937254 |
| CI01000046_06980879_06985344.mRNA | mRNA | downstream | 158590 | 6979911 ~ 6986604 (+) | True | CI01000046_06980879_06985344 |
| CI01000046_06989298_06993467.mRNA | mRNA | downstream | 167977 | 6989298 ~ 6994143 (+) | True | CI01000046_06989298_06993467 |
| TU224234 | other | upstream | 1077254 | 5726121 ~ 5742684 (+) | True | G197528 |
| TU224052 | other | upstream | 1543485 | 5274382 ~ 5276453 (+) | True | G197352 |
| TU223530 | other | upstream | 2398251 | 4415530 ~ 4421687 (+) | True | G196869 |
| TU223789 | other | upstream | 2448508 | 4371011 ~ 4371430 (+) | True | G197121 |
| TU223720 | other | upstream | 2670158 | 4149423 ~ 4149780 (+) | True | G197055 |
