RNA id: TU221152



Basic Information


Item Value
RNA id TU221152
length 1644
RNA type TUCP
GC content 0.31
exon number 4
gene id G194721
representative True

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 458008 ~ 460345 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTGTCTGTTATTCTCTGTGATTATCCTCCTGTGGTTATTATTGAAAGTATTTCCCTTGGATTGCTTGCGTCATGCAGCTCCTTACAACATTTATATACCTGACAGGTGTGAAGATTAAACGTGTGACCAGTGCAAACAATAACCAGAACAAAAACTGTTTCTTTTCACAGAGCAGAATGTGATCTGTATAATTTGTCTTCCTCTCTATTGTCACGTGGCCTGTGCATTTACTTCATCTGCCCTGATGATTTAGTCTAAACCAGCTGCTCTTCAAATAATAATTCACAGTATCTTTGACTGGTGCTATTGCCTGTTTTTAAATGTGGAAGCAATAAAATGTGCAATGATTCATTTGATTTTGTCACATGGATTGGAGTCGTGATCTGAACTGGTACCTTGGCTTTAGAAAATTCGAACCTAACAGAACGAGGATGGCGTTTCTCCAGGTCTATTTGAAGGTTAACAAAGACACAATTAAAACAATAAGTCTGTCAACATCAGATGAAGACATTGGGAAACCCACCGTCAAAGATCTAAAGAAAAAAGCCCTAAGTCATTTTCCTGGAGTGAATGATCATAACCATCTGAGGTTGATTTTCAATGGAAAAGATCTTGAAAATGAAAAAAAACTTGAAGATTACGGCATTCAAGAACTCTCTGTCATTCAAGCCATAATGAAAATGCGTGGTGGAAAAGACCCAGTTCCACTTGATGAAGAGTTTCCCAGGACTCAGTCTATGGCATGATTATATTTTAATATTTGTATATAACTACATATTATATGACAAATGTGTTAAGAAAATGTGTAAATGACAAAACAATTAAATAACAAAAAAAGAATAAACTGTAATAGTGTAAACCAGCAAAAAAAAAAAAAAAAAGTTCTCCCAAAAACTATTAAAATGTTTGTAGGAAAGATTATTTTTGTTGTTGTTGATCTTAAGTATTTGCTTCAGAAAAATCACCGGAATTAAACCTACATTAAAACAATGTAAAAAATTATATGCTGTAAAAAAACAAATACAAAAAGCAAATTTGTTTGTATACTTAATTGATGTAGACTTTTTAAAATCTTTTTACTTTTTCATAATGTTTATTGATTGTCACCATGATTTCAGTTTGCAGGTAAAGCACTGAGGACATAATATTTTGTACTTTAGTGTGAATAAAATATGCAATGATAAATGAGCAGGGCAAATTAGATTGACAAGACGAATAATAATTGAAAATTATTTTAATTGATTGATTGATTGATCATAATTAATTTAAGAAGCAGCCATTTGAGGTGGACAGCTGATTTTAAGTAAGTTGTAGTACTCAGTTACAGTACACTTGGATATAAACTTTAGTTATCTTACTGTATGGCACTGTGTAGAAGGTTAATTACTTTCTTTTGATTGAGTTAAATAATTGTTATTACAGAATTCTCTGAATGTGAAATTGTCCTGTTCTCTAGAAAGATAACCATTACTCAATTGTGGAGTAATTACTATAGTTTGCTTGTTTGTTTTTATTCTATCAGTATTATCATTTGGTTTTATTGTTGGATATGTCTTATTACTTCTTACTTTTCTTTATTATAAATGACTTTCTAACTGTATCCACTGTATTCATTACTGTATCCAATAAACTCTGAATTCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU221143 lncRNA upstream 11251 415077 ~ 415194 (+) True G194718
TU221185 lncRNA upstream 32584 407504 ~ 425424 (+) True G194750
TU221121 lncRNA upstream 72968 384837 ~ 385040 (+) True G194710
TU221117 lncRNA upstream 81253 376552 ~ 376755 (+) True G194706
TU221095 lncRNA upstream 130463 327232 ~ 327545 (+) True G194684
TU221162 lncRNA downstream 4269 464614 ~ 467283 (+) True G194727
TU221198 lncRNA downstream 26588 486933 ~ 487340 (+) True G194762
TU221157 lncRNA downstream 65627 525972 ~ 527485 (+) False CI01000046_00499754_00526138
TU221158 lncRNA downstream 65627 525972 ~ 528550 (+) True CI01000046_00499754_00526138
TU221217 lncRNA downstream 127780 588125 ~ 588490 (+) True G194779
CI01000046_00436111_00443677.mRNA mRNA upstream 12510 436111 ~ 445498 (+) False CI01000046_00436111_00443677
CI01000046_00107578_00163060.mRNA mRNA upstream 294873 104109 ~ 163135 (+) True CI01000046_00107578_00163060
CI01000046_00100813_00103411.mRNA mRNA upstream 353924 100568 ~ 104084 (+) True CI01000046_00100813_00103411
CI01000046_00477221_00481241.mRNA mRNA downstream 16876 477221 ~ 481243 (+) True CI01000046_00477221_00481241
CI01000046_00492034_00493262.mRNA mRNA downstream 31689 492034 ~ 493338 (+) True CI01000046_00492034_00493262
CI01000046_00494421_00496860.mRNA mRNA downstream 34076 494421 ~ 496958 (+) True CI01000046_00494421_00496860
CI01000046_00499754_00526138.mRNA mRNA downstream 39409 499754 ~ 527058 (+) False CI01000046_00499754_00526138
CI01000046_00670755_00673139.mRNA mRNA downstream 210410 670755 ~ 673447 (+) True CI01000046_00670755_00673139
TU221488 other downstream 700812 1161157 ~ 1161690 (+) True G195003
TU222216 other downstream 1079149 1542931 ~ 1563337 (+) True G195643
TU222565 other downstream 1412450 1872795 ~ 1873083 (+) False G195965
TU222567 other downstream 1412450 1872795 ~ 1959148 (+) True G195965
TU222725 other downstream 1979572 2439917 ~ 2440072 (+) False G196108

Expression Profile