RNA id: TU221459


Basic Information

Item Value
RNA id TU221459
length 233
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G194987
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1086167 ~ 1086399 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAACGTTTGGTCAGCGCTGCTCTGACGAATTCATCAGTAAAATAGTTCAGCAACTTAAAAGATACATGACATTTCTCACCAGCGAGGTAATAACTGTGTGGTTCTTGAGGTAGATAAATTTATAGTTTCGCTATTAGTAGAGACACTGCTGCCGTGAGAGACGCACAGACTCTCACAGACTCGGGTAGGCTAACTGATCCTTCGCAAAGACCCGCCGCCCTTAGTTACTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221451 lncRNA upstream 12503 1073385 ~ 1073664 (+) True G194979
TU221449 lncRNA upstream 13581 1072325 ~ 1072586 (+) True G194977
TU221440 lncRNA upstream 49364 1036553 ~ 1036803 (+) True G194968
TU221434 lncRNA upstream 60114 1025833 ~ 1026053 (+) True G194964
TU221282 lncRNA upstream 285239 799294 ~ 800928 (+) True G194823
TU221460 lncRNA downstream 132 1086531 ~ 1086796 (+) True G194988
TU221463 lncRNA downstream 3817 1090216 ~ 1090428 (+) True G194991
TU221500 lncRNA downstream 60608 1147007 ~ 1147555 (+) True G195015
TU221503 lncRNA downstream 70728 1157127 ~ 1157332 (+) True G195018
TU221530 lncRNA downstream 120046 1206445 ~ 1208328 (+) True G195038
CI01000046_01067894_01070331.mRNA mRNA upstream 15390 1066936 ~ 1070777 (+) True CI01000046_01067894_01070331
CI01000046_01026787_01028640.mRNA mRNA upstream 57298 1026502 ~ 1028869 (+) True CI01000046_01026787_01028640
CI01000046_00893353_00931079.mRNA mRNA upstream 153724 893299 ~ 932443 (+) True CI01000046_00893353_00931079
CI01000046_00784993_00786387.mRNA mRNA upstream 299087 784645 ~ 787080 (+) True CI01000046_00784993_00786387
CI01000046_00781088_00781355.mRNA mRNA upstream 304812 781088 ~ 781355 (+) True CI01000046_00781088_00781355
CI01000046_01149090_01159654.mRNA mRNA downstream 62537 1148936 ~ 1160102 (+) True CI01000046_01149090_01159654
CI01000046_01246234_01251650.mRNA mRNA downstream 159333 1245732 ~ 1251689 (+) True CI01000046_01246234_01251650
CI01000046_01255895_01262232.mRNA mRNA downstream 169496 1255895 ~ 1262547 (+) True CI01000046_01255895_01262232
CI01000046_01275798_01283718.mRNA mRNA downstream 189399 1275798 ~ 1284100 (+) True CI01000046_01275798_01283718
CI01000046_01289846_01293954.mRNA mRNA downstream 203169 1289568 ~ 1294336 (+) True CI01000046_01289846_01293954
TU221152 other upstream 625822 458008 ~ 460345 (+) True G194721
TU221488 other downstream 74758 1161157 ~ 1161690 (+) True G195003
TU222216 other downstream 453095 1542931 ~ 1563337 (+) True G195643
TU222565 other downstream 786396 1872795 ~ 1873083 (+) False G195965
TU222567 other downstream 786396 1872795 ~ 1959148 (+) True G195965
TU222725 other downstream 1353518 2439917 ~ 2440072 (+) False G196108

Expression Profile