RNA id: TU221539


Basic Information

Item Value
RNA id TU221539
length 383
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G195047
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1227485 ~ 1227867 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGACACAAAATTGATATTTAGACTCTTAATAATAAAGTTTTCAGAGTGATGCCATGTGCTCCTAAGGTTCTTTATTGAGAATGATGGTTCCGTGAAGAATGTTCAGCATCAGTGGAAACTTTCCATTCCAAAAACGTTTCTTTATAGTGGAAAAAAGATTCTTTAGATTTTTAAAATGTTCTTCACACTGAATCTTTTCAGAACACTGAAAGGTTGGGGAACCAAAAATCGTTCCTCTATGGTATTGCTGTAAAAAAAAAAACTTAATTGGAACCTTTTTTTGGAACCATTTTTAAGAATAGAACTACAATTTTTGGTTTCCCAAAGAACCTTTCAGTGAAAAATTCTTAAAAGAACCATTTTTTTCTTGTGTGGATAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221530 lncRNA upstream 19157 1206445 ~ 1208328 (+) True G195038
TU221503 lncRNA upstream 70153 1157127 ~ 1157332 (+) True G195018
TU221500 lncRNA upstream 79930 1147007 ~ 1147555 (+) True G195015
TU221463 lncRNA upstream 137057 1090216 ~ 1090428 (+) True G194991
TU221460 lncRNA upstream 140689 1086531 ~ 1086796 (+) True G194988
TU221540 lncRNA downstream 849 1228716 ~ 1228919 (+) True G195048
TU221541 lncRNA downstream 1361 1229228 ~ 1229433 (+) True G195049
TU222096 lncRNA downstream 156885 1384752 ~ 1384970 (+) True G195535
TU222125 lncRNA downstream 168896 1396763 ~ 1397086 (+) True G195564
TU222506 lncRNA downstream 515933 1743800 ~ 1744017 (+) True G195909
CI01000046_01149090_01159654.mRNA mRNA upstream 67383 1148936 ~ 1160102 (+) True CI01000046_01149090_01159654
CI01000046_01067894_01070331.mRNA mRNA upstream 156708 1066936 ~ 1070777 (+) True CI01000046_01067894_01070331
CI01000046_01026787_01028640.mRNA mRNA upstream 198616 1026502 ~ 1028869 (+) True CI01000046_01026787_01028640
CI01000046_00893353_00931079.mRNA mRNA upstream 295042 893299 ~ 932443 (+) True CI01000046_00893353_00931079
CI01000046_00784993_00786387.mRNA mRNA upstream 440405 784645 ~ 787080 (+) True CI01000046_00784993_00786387
CI01000046_01246234_01251650.mRNA mRNA downstream 17865 1245732 ~ 1251689 (+) True CI01000046_01246234_01251650
CI01000046_01255895_01262232.mRNA mRNA downstream 28028 1255895 ~ 1262547 (+) True CI01000046_01255895_01262232
CI01000046_01275798_01283718.mRNA mRNA downstream 47931 1275798 ~ 1284100 (+) True CI01000046_01275798_01283718
CI01000046_01289846_01293954.mRNA mRNA downstream 61701 1289568 ~ 1294336 (+) True CI01000046_01289846_01293954
CI01000046_01318513_01343464.mRNA mRNA downstream 88803 1316670 ~ 1344195 (+) True CI01000046_01318513_01343464
TU221488 other upstream 65795 1161157 ~ 1161690 (+) True G195003
TU221152 other upstream 767140 458008 ~ 460345 (+) True G194721
TU222216 other downstream 311627 1542931 ~ 1563337 (+) True G195643
TU222565 other downstream 644928 1872795 ~ 1873083 (+) False G195965
TU222567 other downstream 644928 1872795 ~ 1959148 (+) True G195965
TU222725 other downstream 1212050 2439917 ~ 2440072 (+) False G196108
TU223597 other downstream 1959128 3186995 ~ 3194271 (+) True G196936

Expression Profile