RNA id: TU221541


Basic Information

Item Value
RNA id TU221541
length 206
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G195049
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1229228 ~ 1229433 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTTTTAATTAAGAGATATGACCATTAAAGGGTTAGTTCACCCAAAAATGAAAATAATGTCATTTATTACTCACCCTCATGTCGTTCTACACCCATAAGACCTTCGTTCATCTTCAGAACACAAATTAAGATATTTTTGATGAAATCCGATGGCTCAGTGAGGCCTGCATTGACAGCAATGTCACCAAACCTCTCAAGATCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221540 lncRNA upstream 309 1228716 ~ 1228919 (+) True G195048
TU221539 lncRNA upstream 1361 1227485 ~ 1227867 (+) True G195047
TU221530 lncRNA upstream 20900 1206445 ~ 1208328 (+) True G195038
TU221503 lncRNA upstream 71896 1157127 ~ 1157332 (+) True G195018
TU221500 lncRNA upstream 81673 1147007 ~ 1147555 (+) True G195015
TU222096 lncRNA downstream 155319 1384752 ~ 1384970 (+) True G195535
TU222125 lncRNA downstream 167330 1396763 ~ 1397086 (+) True G195564
TU222506 lncRNA downstream 514367 1743800 ~ 1744017 (+) True G195909
TU222644 lncRNA downstream 637071 1866504 ~ 1866807 (+) True G196035
TU222647 lncRNA downstream 641265 1870698 ~ 1870980 (+) True G196038
CI01000046_01149090_01159654.mRNA mRNA upstream 69126 1148936 ~ 1160102 (+) True CI01000046_01149090_01159654
CI01000046_01067894_01070331.mRNA mRNA upstream 158451 1066936 ~ 1070777 (+) True CI01000046_01067894_01070331
CI01000046_01026787_01028640.mRNA mRNA upstream 200359 1026502 ~ 1028869 (+) True CI01000046_01026787_01028640
CI01000046_00893353_00931079.mRNA mRNA upstream 296785 893299 ~ 932443 (+) True CI01000046_00893353_00931079
CI01000046_00784993_00786387.mRNA mRNA upstream 442148 784645 ~ 787080 (+) True CI01000046_00784993_00786387
CI01000046_01246234_01251650.mRNA mRNA downstream 16299 1245732 ~ 1251689 (+) True CI01000046_01246234_01251650
CI01000046_01255895_01262232.mRNA mRNA downstream 26462 1255895 ~ 1262547 (+) True CI01000046_01255895_01262232
CI01000046_01275798_01283718.mRNA mRNA downstream 46365 1275798 ~ 1284100 (+) True CI01000046_01275798_01283718
CI01000046_01289846_01293954.mRNA mRNA downstream 60135 1289568 ~ 1294336 (+) True CI01000046_01289846_01293954
CI01000046_01318513_01343464.mRNA mRNA downstream 87237 1316670 ~ 1344195 (+) True CI01000046_01318513_01343464
TU221488 other upstream 67538 1161157 ~ 1161690 (+) True G195003
TU221152 other upstream 768883 458008 ~ 460345 (+) True G194721
TU222216 other downstream 310061 1542931 ~ 1563337 (+) True G195643
TU222565 other downstream 643362 1872795 ~ 1873083 (+) False G195965
TU222567 other downstream 643362 1872795 ~ 1959148 (+) True G195965
TU222725 other downstream 1210484 2439917 ~ 2440072 (+) False G196108
TU223597 other downstream 1957562 3186995 ~ 3194271 (+) True G196936

Expression Profile