RNA id: TU222125


Basic Information

Item Value
RNA id TU222125
length 324
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G195564
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1396763 ~ 1397086 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAAACTATTTCTAATAAATCTGAAATTCGCTACATTAAATTTCGCTGTATTTACCACTTTCTTCGCATGTCTTTTAAAAGAAAGTTAAGAATCCAGTAATAATCCTAAATATTTAAATTCATGTACTACCTCAAGCTTTTGTTCCTGGACAAATACATCTGCTTTCACATCACAATCTGGCATTTTAGTAAAAAACATACAAACAGTTTTTCTGACATTAAGATGCAAATGTGAATTGATAATCCATTGTGCAACTTGATTCACACTTGCATTGTTGACACACATGCTCAAGTTATTTTTATGTCCACAATTAAAAATTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222096 lncRNA upstream 11793 1384752 ~ 1384970 (+) True G195535
TU221541 lncRNA upstream 167330 1229228 ~ 1229433 (+) True G195049
TU221540 lncRNA upstream 167844 1228716 ~ 1228919 (+) True G195048
TU221539 lncRNA upstream 168896 1227485 ~ 1227867 (+) True G195047
TU221530 lncRNA upstream 188435 1206445 ~ 1208328 (+) True G195038
TU222506 lncRNA downstream 346714 1743800 ~ 1744017 (+) True G195909
TU222644 lncRNA downstream 469418 1866504 ~ 1866807 (+) True G196035
TU222647 lncRNA downstream 473612 1870698 ~ 1870980 (+) True G196038
TU222568 lncRNA downstream 490991 1888077 ~ 1959148 (+) True G195965
TU222659 lncRNA downstream 564133 1961219 ~ 1961759 (+) True G196050
CI01000046_01318513_01343464.mRNA mRNA upstream 52568 1316670 ~ 1344195 (+) True CI01000046_01318513_01343464
CI01000046_01289846_01293954.mRNA mRNA upstream 102427 1289568 ~ 1294336 (+) True CI01000046_01289846_01293954
CI01000046_01275798_01283718.mRNA mRNA upstream 112663 1275798 ~ 1284100 (+) True CI01000046_01275798_01283718
CI01000046_01255895_01262232.mRNA mRNA upstream 134216 1255895 ~ 1262547 (+) True CI01000046_01255895_01262232
CI01000046_01246234_01251650.mRNA mRNA upstream 145074 1245732 ~ 1251689 (+) True CI01000046_01246234_01251650
CI01000046_01540075_01668012.mRNA mRNA downstream 142989 1540075 ~ 1668012 (+) False CI01000046_01540075_01668012
CI01000046_01865451_01881353.mRNA mRNA downstream 468365 1865451 ~ 1881369 (+) False CI01000046_01865451_01881353
CI01000046_01903950_01922429.mRNA mRNA downstream 505004 1902090 ~ 1922439 (+) True CI01000046_01903950_01922429
CI01000046_01933932_01935589.mRNA mRNA downstream 535804 1932890 ~ 1937822 (+) True CI01000046_01933932_01935589
CI01000046_01963803_01965901.mRNA mRNA downstream 566469 1963555 ~ 1967052 (+) False CI01000046_01963803_01965901
TU221488 other upstream 235073 1161157 ~ 1161690 (+) True G195003
TU221152 other upstream 936418 458008 ~ 460345 (+) True G194721
TU222216 other downstream 142408 1542931 ~ 1563337 (+) True G195643
TU222565 other downstream 475709 1872795 ~ 1873083 (+) False G195965
TU222567 other downstream 475709 1872795 ~ 1959148 (+) True G195965
TU222725 other downstream 1042831 2439917 ~ 2440072 (+) False G196108
TU223597 other downstream 1789909 3186995 ~ 3194271 (+) True G196936

Expression Profile