RNA id: TU222568


Basic Information

Item Value
RNA id TU222568
length 526
lncRNA type read_through
GC content 0.39
exon number 4
gene id G195965
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1872795 ~ 1959148 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGGCGAGTTCCCTGTTATACTGGCAAAAAGGGAAGTGTGAGGTAGACCATTATTTTTCACGGTTTAAACTACTCGTCTGGGCTTTTCGTGCGTTCCTGACTGAACCCATGTGTTTAATTTGTCTACAGCGTGGTTAGTTAAATCGATTTATTTCATTTTTACTTTACGGGCGAGGCAACGAACAGTCAAAAGGACGTACAGGATGTTTTCCACATTTCTTCTTTGTCAGATCATCATCACACTCATCTGCCAAACACTTTGTTACGAACCCACAGAGAAGGACTTGAAGTGTTTCAATGACTATGAGACAGAAATGAAGTGCAGTTTCGAGTCTGACGGCCTCATAAGTTGCTTTGGATACAAACTCAATATCACACGTAATGAAGCAGATGTGTTAAAAGAATATACATGCATCTTTGAGAGAAATCATCACAGTCCCAGTTGTGAATGTAAAATTGAAGTCCAAGGGTTTGTTATAACAGAGATATTCACTACTACACTTCTGGAAGGAACAAACGTTTTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222647 lncRNA upstream 17097 1870698 ~ 1870980 (+) True G196038
TU222644 lncRNA upstream 21270 1866504 ~ 1866807 (+) True G196035
TU222506 lncRNA upstream 144060 1743800 ~ 1744017 (+) True G195909
TU222125 lncRNA upstream 490991 1396763 ~ 1397086 (+) True G195564
TU222096 lncRNA upstream 503107 1384752 ~ 1384970 (+) True G195535
TU222659 lncRNA downstream 2071 1961219 ~ 1961759 (+) True G196050
TU222660 lncRNA downstream 3098 1962246 ~ 1962532 (+) True G196051
TU222580 lncRNA downstream 7584 1966732 ~ 1968371 (+) True CI01000046_01963803_01965901
TU222587 lncRNA downstream 37975 1997123 ~ 1999094 (+) True G195978
TU222569 lncRNA downstream 76734 2035882 ~ 2036110 (+) False G195966
CI01000046_01865451_01881353.mRNA mRNA upstream 6708 1865451 ~ 1881369 (+) False CI01000046_01865451_01881353
CI01000046_01540075_01668012.mRNA mRNA upstream 220065 1540075 ~ 1668012 (+) False CI01000046_01540075_01668012
CI01000046_01318513_01343464.mRNA mRNA upstream 543882 1316670 ~ 1344195 (+) True CI01000046_01318513_01343464
CI01000046_01289846_01293954.mRNA mRNA upstream 593741 1289568 ~ 1294336 (+) True CI01000046_01289846_01293954
CI01000046_01275798_01283718.mRNA mRNA upstream 603977 1275798 ~ 1284100 (+) True CI01000046_01275798_01283718
CI01000046_01963803_01965901.mRNA mRNA downstream 4407 1963555 ~ 1967052 (+) False CI01000046_01963803_01965901
CI01000046_01988070_01995034.mRNA mRNA downstream 27172 1986320 ~ 1995330 (+) True CI01000046_01988070_01995034
CI01000046_02006028_02024639.mRNA mRNA downstream 46880 2006028 ~ 2024940 (+) True CI01000046_02006028_02024639
CI01000046_02027256_02031337.mRNA mRNA downstream 68006 2027154 ~ 2031451 (+) True CI01000046_02027256_02031337
CI01000046_02037519_02037782.mRNA mRNA downstream 78371 2037519 ~ 2039055 (+) False CI01000046_02037519_02037782
TU222565 other upstream 13376 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 324740 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 726387 1161157 ~ 1161690 (+) True G195003
TU221152 other upstream 1427732 458008 ~ 460345 (+) True G194721
TU222725 other downstream 480769 2439917 ~ 2440072 (+) False G196108
TU223597 other downstream 1227847 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 1984680 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 2190275 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 2411863 4371011 ~ 4371430 (+) True G197121

Expression Profile