RNA id: TU222718


Basic Information

Item Value
RNA id TU222718
length 212
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G196102
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2163283 ~ 2163494 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGACTTAAGCATGTCATATAGAAGCCATAGTATGAGAAAAATGATTTGATTGGTTGCTGCTTCCATTGAAAAGGAACAAATGTGCATATTTTTAATGATTGGGCCTGTTCCCTAACATATGTTGAGGCAGTGGGTGCTCTTACGTTTCATGTTTTCTTCAGTACCTTGAGGATGCTAGTTGATTAAGGTCACTCTCCCGTATTGGACTTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222603 lncRNA upstream 52520 2106352 ~ 2110763 (+) True G195994
TU222702 lncRNA upstream 74064 2088724 ~ 2089219 (+) True G196087
TU222701 lncRNA upstream 75769 2087279 ~ 2087514 (+) True G196086
TU222700 lncRNA upstream 76152 2086809 ~ 2087131 (+) True G196085
TU222695 lncRNA upstream 79637 2082685 ~ 2083646 (+) True G196080
TU222722 lncRNA downstream 2775 2166269 ~ 2166588 (+) True G196106
TU222752 lncRNA downstream 19004 2182498 ~ 2182699 (+) True G196128
TU222755 lncRNA downstream 32149 2195643 ~ 2195853 (+) True G196131
TU222771 lncRNA downstream 56701 2220195 ~ 2223088 (+) True G196142
TU222770 lncRNA downstream 61012 2224506 ~ 2226140 (+) True G196141
CI01000046_02123765_02158243.mRNA mRNA upstream 5040 2123765 ~ 2158243 (+) True CI01000046_02123765_02158243
CI01000046_02066859_02072868.mRNA mRNA upstream 90269 2066859 ~ 2073014 (+) True CI01000046_02066859_02072868
CI01000046_02037519_02037782.mRNA mRNA upstream 124228 2037519 ~ 2039055 (+) False CI01000046_02037519_02037782
CI01000046_02027256_02031337.mRNA mRNA upstream 131832 2027154 ~ 2031451 (+) True CI01000046_02027256_02031337
CI01000046_02006028_02024639.mRNA mRNA upstream 138343 2006028 ~ 2024940 (+) True CI01000046_02006028_02024639
CI01000046_02264732_02268319.mRNA mRNA downstream 101078 2264572 ~ 2268638 (+) True CI01000046_02264732_02268319
CI01000046_02335530_02348525.mRNA mRNA downstream 170480 2333974 ~ 2348945 (+) True CI01000046_02335530_02348525
CI01000046_02356713_02359204.mRNA mRNA downstream 193160 2356654 ~ 2360009 (+) True CI01000046_02356713_02359204
CI01000046_02365658_02365816.mRNA mRNA downstream 202164 2365658 ~ 2366186 (+) True CI01000046_02365658_02365816
CI01000046_02451052_02454565.mRNA mRNA downstream 287558 2451052 ~ 2454671 (+) False CI01000046_02451052_02454565
TU222567 other upstream 204135 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 288582 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 599946 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 1001593 1161157 ~ 1161690 (+) True G195003
TU221152 other upstream 1702938 458008 ~ 460345 (+) True G194721
TU222725 other downstream 276423 2439917 ~ 2440072 (+) False G196108
TU223597 other downstream 1023501 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 1780334 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 1985929 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 2207517 4371011 ~ 4371430 (+) True G197121

Expression Profile