Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU222771 |
| length | 2869 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 2 |
| gene id | G196142 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 2220195 ~ 2223088 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU222755 | lncRNA | upstream | 24342 | 2195643 ~ 2195853 (+) | True | G196131 |
| TU222752 | lncRNA | upstream | 37496 | 2182498 ~ 2182699 (+) | True | G196128 |
| TU222722 | lncRNA | upstream | 53607 | 2166269 ~ 2166588 (+) | True | G196106 |
| TU222718 | lncRNA | upstream | 56701 | 2163283 ~ 2163494 (+) | True | G196102 |
| TU222603 | lncRNA | upstream | 109432 | 2106352 ~ 2110763 (+) | True | G195994 |
| TU222770 | lncRNA | downstream | 1418 | 2224506 ~ 2226140 (+) | True | G196141 |
| TU222776 | lncRNA | downstream | 32307 | 2255395 ~ 2255629 (+) | True | G196147 |
| TU222783 | lncRNA | downstream | 39160 | 2262248 ~ 2262482 (+) | True | G196154 |
| TU222784 | lncRNA | downstream | 40053 | 2263141 ~ 2263375 (+) | True | G196155 |
| TU222785 | lncRNA | downstream | 40743 | 2263831 ~ 2264062 (+) | True | G196156 |
| CI01000046_02123765_02158243.mRNA | mRNA | upstream | 61952 | 2123765 ~ 2158243 (+) | True | CI01000046_02123765_02158243 |
| CI01000046_02066859_02072868.mRNA | mRNA | upstream | 147181 | 2066859 ~ 2073014 (+) | True | CI01000046_02066859_02072868 |
| CI01000046_02037519_02037782.mRNA | mRNA | upstream | 181140 | 2037519 ~ 2039055 (+) | False | CI01000046_02037519_02037782 |
| CI01000046_02027256_02031337.mRNA | mRNA | upstream | 188744 | 2027154 ~ 2031451 (+) | True | CI01000046_02027256_02031337 |
| CI01000046_02006028_02024639.mRNA | mRNA | upstream | 195255 | 2006028 ~ 2024940 (+) | True | CI01000046_02006028_02024639 |
| CI01000046_02264732_02268319.mRNA | mRNA | downstream | 41484 | 2264572 ~ 2268638 (+) | True | CI01000046_02264732_02268319 |
| CI01000046_02335530_02348525.mRNA | mRNA | downstream | 110886 | 2333974 ~ 2348945 (+) | True | CI01000046_02335530_02348525 |
| CI01000046_02356713_02359204.mRNA | mRNA | downstream | 133566 | 2356654 ~ 2360009 (+) | True | CI01000046_02356713_02359204 |
| CI01000046_02365658_02365816.mRNA | mRNA | downstream | 142570 | 2365658 ~ 2366186 (+) | True | CI01000046_02365658_02365816 |
| CI01000046_02451052_02454565.mRNA | mRNA | downstream | 227964 | 2451052 ~ 2454671 (+) | False | CI01000046_02451052_02454565 |
| TU222567 | other | upstream | 261047 | 1872795 ~ 1959148 (+) | True | G195965 |
| TU222565 | other | upstream | 345494 | 1872795 ~ 1873083 (+) | False | G195965 |
| TU222216 | other | upstream | 656858 | 1542931 ~ 1563337 (+) | True | G195643 |
| TU221488 | other | upstream | 1058505 | 1161157 ~ 1161690 (+) | True | G195003 |
| TU221152 | other | upstream | 1759850 | 458008 ~ 460345 (+) | True | G194721 |
| TU222725 | other | downstream | 216829 | 2439917 ~ 2440072 (+) | False | G196108 |
| TU223597 | other | downstream | 963907 | 3186995 ~ 3194271 (+) | True | G196936 |
| TU223494 | other | downstream | 1720740 | 3943828 ~ 3945500 (+) | True | CI01000046_03943890_03945302 |
| TU223720 | other | downstream | 1926335 | 4149423 ~ 4149780 (+) | True | G197055 |
| TU223789 | other | downstream | 2147923 | 4371011 ~ 4371430 (+) | True | G197121 |
