RNA id: TU222776


Basic Information

Item Value
RNA id TU222776
length 235
lncRNA type inter_gene
GC content 0.23
exon number 1
gene id G196147
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2255395 ~ 2255629 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAGACGACACATTTGATAGTGTGCGCTGTAACAGTAGTATTTCTAAGAGAAAAAAAAATGTAATATAACAATAATATAACTAAACATATGCATGCATATATTAATAATATACCAAAGAAAAATATACATGATAAAAAATGTGTTCAAAGATGATCAAACTATGTTAGATATGAGATAAATTTAATATTTTAATTAATATTTTAATCATAAACATACTGTCAACCTCAAGAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222770 lncRNA upstream 29255 2224506 ~ 2226140 (+) True G196141
TU222771 lncRNA upstream 32307 2220195 ~ 2223088 (+) True G196142
TU222755 lncRNA upstream 59542 2195643 ~ 2195853 (+) True G196131
TU222752 lncRNA upstream 72696 2182498 ~ 2182699 (+) True G196128
TU222722 lncRNA upstream 88807 2166269 ~ 2166588 (+) True G196106
TU222783 lncRNA downstream 6619 2262248 ~ 2262482 (+) True G196154
TU222784 lncRNA downstream 7512 2263141 ~ 2263375 (+) True G196155
TU222785 lncRNA downstream 8202 2263831 ~ 2264062 (+) True G196156
TU222793 lncRNA downstream 27909 2283538 ~ 2283766 (+) True G196164
TU222805 lncRNA downstream 45797 2301426 ~ 2301796 (+) True G196176
CI01000046_02123765_02158243.mRNA mRNA upstream 97152 2123765 ~ 2158243 (+) True CI01000046_02123765_02158243
CI01000046_02066859_02072868.mRNA mRNA upstream 182381 2066859 ~ 2073014 (+) True CI01000046_02066859_02072868
CI01000046_02037519_02037782.mRNA mRNA upstream 216340 2037519 ~ 2039055 (+) False CI01000046_02037519_02037782
CI01000046_02027256_02031337.mRNA mRNA upstream 223944 2027154 ~ 2031451 (+) True CI01000046_02027256_02031337
CI01000046_02006028_02024639.mRNA mRNA upstream 230455 2006028 ~ 2024940 (+) True CI01000046_02006028_02024639
CI01000046_02264732_02268319.mRNA mRNA downstream 8943 2264572 ~ 2268638 (+) True CI01000046_02264732_02268319
CI01000046_02335530_02348525.mRNA mRNA downstream 78345 2333974 ~ 2348945 (+) True CI01000046_02335530_02348525
CI01000046_02356713_02359204.mRNA mRNA downstream 101025 2356654 ~ 2360009 (+) True CI01000046_02356713_02359204
CI01000046_02365658_02365816.mRNA mRNA downstream 110029 2365658 ~ 2366186 (+) True CI01000046_02365658_02365816
CI01000046_02451052_02454565.mRNA mRNA downstream 195423 2451052 ~ 2454671 (+) False CI01000046_02451052_02454565
TU222567 other upstream 296247 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 380694 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 692058 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 1093705 1161157 ~ 1161690 (+) True G195003
TU221152 other upstream 1795050 458008 ~ 460345 (+) True G194721
TU222725 other downstream 184288 2439917 ~ 2440072 (+) False G196108
TU223597 other downstream 931366 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 1688199 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 1893794 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 2115382 4371011 ~ 4371430 (+) True G197121

Expression Profile