RNA id: TU222783


Basic Information

Item Value
RNA id TU222783
length 235
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G196154
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2262248 ~ 2262482 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCACGTCTTTTTCTTTAATTGGAGCTGCATCTCGTCGTATCAAATCATCCACAACAATTAATTTAGATTTAATTCTATAATTATCATCAAATCGAATAATGTGCAACTTAATTTAGATAGTTAAAAATTAACGCGCGTGAAGTTAATTGAGTAATTAAACTCCTCAGCTGTTGCGTATTAATTTGCTAGCCTAATTAAAAATGAATTTGATTTTATGTAATGTTAGTGATGCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222776 lncRNA upstream 6619 2255395 ~ 2255629 (+) True G196147
TU222770 lncRNA upstream 36108 2224506 ~ 2226140 (+) True G196141
TU222771 lncRNA upstream 39160 2220195 ~ 2223088 (+) True G196142
TU222755 lncRNA upstream 66395 2195643 ~ 2195853 (+) True G196131
TU222752 lncRNA upstream 79549 2182498 ~ 2182699 (+) True G196128
TU222784 lncRNA downstream 659 2263141 ~ 2263375 (+) True G196155
TU222785 lncRNA downstream 1349 2263831 ~ 2264062 (+) True G196156
TU222793 lncRNA downstream 21056 2283538 ~ 2283766 (+) True G196164
TU222805 lncRNA downstream 38944 2301426 ~ 2301796 (+) True G196176
TU222806 lncRNA downstream 39373 2301855 ~ 2302078 (+) True G196177
CI01000046_02123765_02158243.mRNA mRNA upstream 104005 2123765 ~ 2158243 (+) True CI01000046_02123765_02158243
CI01000046_02066859_02072868.mRNA mRNA upstream 189234 2066859 ~ 2073014 (+) True CI01000046_02066859_02072868
CI01000046_02037519_02037782.mRNA mRNA upstream 223193 2037519 ~ 2039055 (+) False CI01000046_02037519_02037782
CI01000046_02027256_02031337.mRNA mRNA upstream 230797 2027154 ~ 2031451 (+) True CI01000046_02027256_02031337
CI01000046_02006028_02024639.mRNA mRNA upstream 237308 2006028 ~ 2024940 (+) True CI01000046_02006028_02024639
CI01000046_02264732_02268319.mRNA mRNA downstream 2090 2264572 ~ 2268638 (+) True CI01000046_02264732_02268319
CI01000046_02335530_02348525.mRNA mRNA downstream 71492 2333974 ~ 2348945 (+) True CI01000046_02335530_02348525
CI01000046_02356713_02359204.mRNA mRNA downstream 94172 2356654 ~ 2360009 (+) True CI01000046_02356713_02359204
CI01000046_02365658_02365816.mRNA mRNA downstream 103176 2365658 ~ 2366186 (+) True CI01000046_02365658_02365816
CI01000046_02451052_02454565.mRNA mRNA downstream 188570 2451052 ~ 2454671 (+) False CI01000046_02451052_02454565
TU222567 other upstream 303100 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 387547 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 698911 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 1100558 1161157 ~ 1161690 (+) True G195003
TU221152 other upstream 1801903 458008 ~ 460345 (+) True G194721
TU222725 other downstream 177435 2439917 ~ 2440072 (+) False G196108
TU223597 other downstream 924513 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 1681346 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 1886941 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 2108529 4371011 ~ 4371430 (+) True G197121

Expression Profile