RNA id: TU222785


Basic Information

Item Value
RNA id TU222785
length 232
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G196156
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2263831 ~ 2264062 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAACTCCAGACATTGGCCAAATAAAGTGGAATTAATTCTCTGTAATGAGAGGGGGAGACATGACGTGGGATTGATTACCATTCTGTATTCAAAAACACAGTTCACTTGCATAAATGCAATACATATATGTCACTGTTGACTTTAATATAAGATTAATTAATGATAATGATAGATTAAGGTGCACCCAACCACGTCCCGTCCTTAATTCAAAATATCAAATGATGATATAGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222784 lncRNA upstream 456 2263141 ~ 2263375 (+) True G196155
TU222783 lncRNA upstream 1349 2262248 ~ 2262482 (+) True G196154
TU222776 lncRNA upstream 8202 2255395 ~ 2255629 (+) True G196147
TU222770 lncRNA upstream 37691 2224506 ~ 2226140 (+) True G196141
TU222771 lncRNA upstream 40743 2220195 ~ 2223088 (+) True G196142
TU222793 lncRNA downstream 19476 2283538 ~ 2283766 (+) True G196164
TU222805 lncRNA downstream 37364 2301426 ~ 2301796 (+) True G196176
TU222806 lncRNA downstream 37793 2301855 ~ 2302078 (+) True G196177
TU222743 lncRNA downstream 45758 2309820 ~ 2649187 (+) True G196119
TU222838 lncRNA downstream 121688 2385750 ~ 2386244 (+) True G196209
CI01000046_02123765_02158243.mRNA mRNA upstream 105588 2123765 ~ 2158243 (+) True CI01000046_02123765_02158243
CI01000046_02066859_02072868.mRNA mRNA upstream 190817 2066859 ~ 2073014 (+) True CI01000046_02066859_02072868
CI01000046_02037519_02037782.mRNA mRNA upstream 224776 2037519 ~ 2039055 (+) False CI01000046_02037519_02037782
CI01000046_02027256_02031337.mRNA mRNA upstream 232380 2027154 ~ 2031451 (+) True CI01000046_02027256_02031337
CI01000046_02006028_02024639.mRNA mRNA upstream 238891 2006028 ~ 2024940 (+) True CI01000046_02006028_02024639
CI01000046_02264732_02268319.mRNA mRNA downstream 510 2264572 ~ 2268638 (+) True CI01000046_02264732_02268319
CI01000046_02335530_02348525.mRNA mRNA downstream 69912 2333974 ~ 2348945 (+) True CI01000046_02335530_02348525
CI01000046_02356713_02359204.mRNA mRNA downstream 92592 2356654 ~ 2360009 (+) True CI01000046_02356713_02359204
CI01000046_02365658_02365816.mRNA mRNA downstream 101596 2365658 ~ 2366186 (+) True CI01000046_02365658_02365816
CI01000046_02451052_02454565.mRNA mRNA downstream 186990 2451052 ~ 2454671 (+) False CI01000046_02451052_02454565
TU222567 other upstream 304683 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 389130 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 700494 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 1102141 1161157 ~ 1161690 (+) True G195003
TU221152 other upstream 1803486 458008 ~ 460345 (+) True G194721
TU222725 other downstream 175855 2439917 ~ 2440072 (+) False G196108
TU223597 other downstream 922933 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 1679766 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 1885361 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 2106949 4371011 ~ 4371430 (+) True G197121

Expression Profile