RNA id: TU222793


Basic Information

Item Value
RNA id TU222793
length 229
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G196164
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2283538 ~ 2283766 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCGAATGCCCCTCTAACACTCTTAAAACAACTAAGGATATGTTTTATACAACTAGGATTTGTATAATCTAAACCAAACACTATTCATTTGCATTATTTTGCAAATTAAGCTGCACACCCTGCTGAGATGAGCTACAGCTTAGGTTCCCTATTCCATTGTTTCCAGCTCTATTGGACATTTTAGTTTGTGTAGTAATAAAAGAAGTGTCCAAAATACACATATTTAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222785 lncRNA upstream 19476 2263831 ~ 2264062 (+) True G196156
TU222784 lncRNA upstream 20163 2263141 ~ 2263375 (+) True G196155
TU222783 lncRNA upstream 21056 2262248 ~ 2262482 (+) True G196154
TU222776 lncRNA upstream 27909 2255395 ~ 2255629 (+) True G196147
TU222770 lncRNA upstream 57398 2224506 ~ 2226140 (+) True G196141
TU222805 lncRNA downstream 17660 2301426 ~ 2301796 (+) True G196176
TU222806 lncRNA downstream 18089 2301855 ~ 2302078 (+) True G196177
TU222743 lncRNA downstream 26054 2309820 ~ 2649187 (+) True G196119
TU222838 lncRNA downstream 101984 2385750 ~ 2386244 (+) True G196209
TU222724 lncRNA downstream 154084 2437850 ~ 2481044 (+) True G196107
CI01000046_02264732_02268319.mRNA mRNA upstream 14900 2264572 ~ 2268638 (+) True CI01000046_02264732_02268319
CI01000046_02123765_02158243.mRNA mRNA upstream 125295 2123765 ~ 2158243 (+) True CI01000046_02123765_02158243
CI01000046_02066859_02072868.mRNA mRNA upstream 210524 2066859 ~ 2073014 (+) True CI01000046_02066859_02072868
CI01000046_02037519_02037782.mRNA mRNA upstream 244483 2037519 ~ 2039055 (+) False CI01000046_02037519_02037782
CI01000046_02027256_02031337.mRNA mRNA upstream 252087 2027154 ~ 2031451 (+) True CI01000046_02027256_02031337
CI01000046_02335530_02348525.mRNA mRNA downstream 50208 2333974 ~ 2348945 (+) True CI01000046_02335530_02348525
CI01000046_02356713_02359204.mRNA mRNA downstream 72888 2356654 ~ 2360009 (+) True CI01000046_02356713_02359204
CI01000046_02365658_02365816.mRNA mRNA downstream 81892 2365658 ~ 2366186 (+) True CI01000046_02365658_02365816
CI01000046_02451052_02454565.mRNA mRNA downstream 167286 2451052 ~ 2454671 (+) False CI01000046_02451052_02454565
CI01000046_02616123_02661535.mRNA mRNA downstream 332281 2616047 ~ 2661964 (+) True CI01000046_02616123_02661535
TU222567 other upstream 324390 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 408837 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 720201 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 1121848 1161157 ~ 1161690 (+) True G195003
TU221152 other upstream 1823193 458008 ~ 460345 (+) True G194721
TU222725 other downstream 156151 2439917 ~ 2440072 (+) False G196108
TU223597 other downstream 903229 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 1660062 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 1865657 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 2087245 4371011 ~ 4371430 (+) True G197121

Expression Profile