RNA id: TU222838


Basic Information

Item Value
RNA id TU222838
length 223
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G196209
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2385750 ~ 2386244 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTGAGTTTCTTTCTAAAAAAGTAACTTTTTCTCTCCTGGGCTGGGCTTACTTGTTTTTTAATAACCAAAAAAAAAAAAAATTGGCAAATGTAAAGGCTCTTTCACACCCAAAGTGAATGCAAATTCACGCCTGTACAGTAGATGGCGCAGCTCAAACAAACCTTTCACCTTTCAGCTGTGCTGCCATTAGGGATTGCAGAAGAAAAGGTGTGAAGGTGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222806 lncRNA upstream 83672 2301855 ~ 2302078 (+) True G196177
TU222805 lncRNA upstream 83954 2301426 ~ 2301796 (+) True G196176
TU222793 lncRNA upstream 101984 2283538 ~ 2283766 (+) True G196164
TU222785 lncRNA upstream 121688 2263831 ~ 2264062 (+) True G196156
TU222784 lncRNA upstream 122375 2263141 ~ 2263375 (+) True G196155
TU222724 lncRNA downstream 51606 2437850 ~ 2481044 (+) True G196107
TU222728 lncRNA downstream 53673 2439917 ~ 2445456 (+) True G196108
TU222729 lncRNA downstream 53673 2439917 ~ 2440072 (+) True G196108
TU222746 lncRNA downstream 251754 2637998 ~ 2689802 (+) True G196122
TU222747 lncRNA downstream 263044 2649288 ~ 2749966 (+) True G196123
CI01000046_02365658_02365816.mRNA mRNA upstream 19564 2365658 ~ 2366186 (+) True CI01000046_02365658_02365816
CI01000046_02356713_02359204.mRNA mRNA upstream 25741 2356654 ~ 2360009 (+) True CI01000046_02356713_02359204
CI01000046_02335530_02348525.mRNA mRNA upstream 36805 2333974 ~ 2348945 (+) True CI01000046_02335530_02348525
CI01000046_02264732_02268319.mRNA mRNA upstream 117112 2264572 ~ 2268638 (+) True CI01000046_02264732_02268319
CI01000046_02123765_02158243.mRNA mRNA upstream 227507 2123765 ~ 2158243 (+) True CI01000046_02123765_02158243
CI01000046_02451052_02454565.mRNA mRNA downstream 64808 2451052 ~ 2454671 (+) False CI01000046_02451052_02454565
CI01000046_02616123_02661535.mRNA mRNA downstream 229803 2616047 ~ 2661964 (+) True CI01000046_02616123_02661535
CI01000046_02674254_02676647.mRNA mRNA downstream 287816 2674060 ~ 2676801 (+) True CI01000046_02674254_02676647
CI01000046_02794245_02796188.mRNA mRNA downstream 407635 2793879 ~ 2797088 (+) True CI01000046_02794245_02796188
CI01000046_02868880_02871348.mRNA mRNA downstream 482636 2868880 ~ 2871611 (+) True CI01000046_02868880_02871348
TU222567 other upstream 426602 1872795 ~ 1959148 (+) True G195965
TU222565 other upstream 511049 1872795 ~ 1873083 (+) False G195965
TU222216 other upstream 822413 1542931 ~ 1563337 (+) True G195643
TU221488 other upstream 1224060 1161157 ~ 1161690 (+) True G195003
TU221152 other upstream 1925405 458008 ~ 460345 (+) True G194721
TU222725 other downstream 53673 2439917 ~ 2440072 (+) False G196108
TU223597 other downstream 800751 3186995 ~ 3194271 (+) True G196936
TU223494 other downstream 1557584 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223720 other downstream 1763179 4149423 ~ 4149780 (+) True G197055
TU223789 other downstream 1984767 4371011 ~ 4371430 (+) True G197121

Expression Profile